Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02655

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02645 and AMB_RS02650 are separated by 37 nucleotidesAMB_RS02650 and AMB_RS02655 overlap by 4 nucleotidesAMB_RS02655 and AMB_RS02660 are separated by 16 nucleotidesAMB_RS02660 and AMB_RS02665 overlap by 8 nucleotides AMB_RS02645: AMB_RS02645 - precorrin-4 C(11)-methyltransferase, at 551,289 to 552,050 _RS02645 AMB_RS02650: AMB_RS02650 - uroporphyrinogen-III C-methyltransferase, at 552,088 to 552,870 _RS02650 AMB_RS02655: AMB_RS02655 - sulfite exporter TauE/SafE family protein, at 552,867 to 553,625 _RS02655 AMB_RS02660: AMB_RS02660 - SCO family protein, at 553,642 to 554,244 _RS02660 AMB_RS02665: AMB_RS02665 - cobyrinate a,c-diamide synthase, at 554,237 to 555,607 _RS02665 Position (kb) 552 553 554Strain fitness (log2 ratio) -3 -2 -1 0 1at 552.072 kb on + strandat 552.072 kb on + strandat 552.072 kb on + strandat 552.072 kb on + strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.077 kb on + strandat 552.078 kb on - strandat 552.079 kb on - strandat 552.500 kb on - strand, within AMB_RS02650at 552.500 kb on - strand, within AMB_RS02650at 552.500 kb on - strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.634 kb on + strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 552.635 kb on - strand, within AMB_RS02650at 553.103 kb on + strand, within AMB_RS02655at 553.104 kb on + strand, within AMB_RS02655at 553.104 kb on + strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.105 kb on - strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.128 kb on + strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.129 kb on - strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.401 kb on + strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.402 kb on - strand, within AMB_RS02655at 553.567 kb on + strandat 553.567 kb on + strandat 553.568 kb on - strandat 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.834 kb on + strand, within AMB_RS02660at 553.884 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.002 kb on + strand, within AMB_RS02660at 554.122 kb on + strand, within AMB_RS02660at 554.149 kb on + strand, within AMB_RS02660at 554.149 kb on + strand, within AMB_RS02660at 554.149 kb on + strand, within AMB_RS02660

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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552,072 + +0.1
552,072 + -0.4
552,072 + +0.4
552,072 + +0.4
552,073 - -1.0
552,073 - -0.6
552,073 - -0.2
552,073 - +0.3
552,073 - -1.2
552,073 - -0.1
552,073 - -2.0
552,073 - +0.6
552,073 - -0.9
552,073 - -1.3
552,073 - -0.3
552,073 - -0.9
552,073 - +0.6
552,074 + +0.6
552,074 + -0.2
552,074 + -1.0
552,074 + +0.2
552,074 + -0.9
552,074 + -0.5
552,075 - -0.3
552,075 - -0.4
552,075 - +0.6
552,075 - +0.6
552,075 - -2.0
552,075 - -1.0
552,075 - -3.3
552,075 - -0.6
552,077 + -1.7
552,078 - -1.7
552,079 - -1.1
552,500 - AMB_RS02650 0.53 -0.7
552,500 - AMB_RS02650 0.53 +1.4
552,500 - AMB_RS02650 0.53 -1.7
552,634 + AMB_RS02650 0.70 -0.3
552,634 + AMB_RS02650 0.70 -0.1
552,634 + AMB_RS02650 0.70 -0.1
552,634 + AMB_RS02650 0.70 +1.7
552,634 + AMB_RS02650 0.70 +0.6
552,634 + AMB_RS02650 0.70 +1.3
552,634 + AMB_RS02650 0.70 -0.1
552,634 + AMB_RS02650 0.70 -0.8
552,635 - AMB_RS02650 0.70 -0.7
552,635 - AMB_RS02650 0.70 -0.4
552,635 - AMB_RS02650 0.70 -0.2
552,635 - AMB_RS02650 0.70 -1.8
552,635 - AMB_RS02650 0.70 -0.2
552,635 - AMB_RS02650 0.70 -0.9
552,635 - AMB_RS02650 0.70 +0.0
552,635 - AMB_RS02650 0.70 -1.7
552,635 - AMB_RS02650 0.70 -2.5
553,103 + AMB_RS02655 0.31 -3.3
553,104 + AMB_RS02655 0.31 -1.1
553,104 + AMB_RS02655 0.31 -1.6
553,105 - AMB_RS02655 0.31 -1.0
553,105 - AMB_RS02655 0.31 -0.6
553,105 - AMB_RS02655 0.31 -0.3
553,105 - AMB_RS02655 0.31 +0.6
553,105 - AMB_RS02655 0.31 +0.5
553,128 + AMB_RS02655 0.34 -0.9
553,128 + AMB_RS02655 0.34 -0.4
553,128 + AMB_RS02655 0.34 -3.3
553,128 + AMB_RS02655 0.34 +0.5
553,128 + AMB_RS02655 0.34 -0.7
553,129 - AMB_RS02655 0.35 -0.2
553,129 - AMB_RS02655 0.35 -2.5
553,129 - AMB_RS02655 0.35 -0.8
553,129 - AMB_RS02655 0.35 -2.7
553,129 - AMB_RS02655 0.35 +0.9
553,129 - AMB_RS02655 0.35 +0.6
553,129 - AMB_RS02655 0.35 -1.2
553,129 - AMB_RS02655 0.35 -0.6
553,129 - AMB_RS02655 0.35 -2.4
553,129 - AMB_RS02655 0.35 +0.1
553,129 - AMB_RS02655 0.35 -0.6
553,129 - AMB_RS02655 0.35 -1.6
553,129 - AMB_RS02655 0.35 +0.0
553,129 - AMB_RS02655 0.35 -0.7
553,129 - AMB_RS02655 0.35 -1.2
553,129 - AMB_RS02655 0.35 -1.5
553,129 - AMB_RS02655 0.35 +1.2
553,129 - AMB_RS02655 0.35 -1.1
553,401 + AMB_RS02655 0.70 -0.8
553,401 + AMB_RS02655 0.70 -0.5
553,401 + AMB_RS02655 0.70 -1.0
553,401 + AMB_RS02655 0.70 -0.9
553,401 + AMB_RS02655 0.70 -1.1
553,402 - AMB_RS02655 0.70 -1.3
553,402 - AMB_RS02655 0.70 -0.9
553,402 - AMB_RS02655 0.70 -0.7
553,402 - AMB_RS02655 0.70 -0.7
553,402 - AMB_RS02655 0.70 -1.6
553,402 - AMB_RS02655 0.70 -1.1
553,402 - AMB_RS02655 0.70 -0.7
553,567 + +0.1
553,567 + -0.2
553,568 - -1.2
553,834 + AMB_RS02660 0.32 -2.7
553,834 + AMB_RS02660 0.32 -1.2
553,834 + AMB_RS02660 0.32 -1.0
553,834 + AMB_RS02660 0.32 -1.3
553,884 + AMB_RS02660 0.40 -1.4
554,002 + AMB_RS02660 0.60 +0.0
554,002 + AMB_RS02660 0.60 -1.6
554,002 + AMB_RS02660 0.60 -3.4
554,002 + AMB_RS02660 0.60 -0.9
554,122 + AMB_RS02660 0.80 -0.4
554,149 + AMB_RS02660 0.84 -1.6
554,149 + AMB_RS02660 0.84 -1.7
554,149 + AMB_RS02660 0.84 -1.3

Or see this region's nucleotide sequence