Experiment: 150_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01700 and AMB_RS01705 are separated by 24 nucleotides AMB_RS01705 and AMB_RS01710 are separated by 16 nucleotides AMB_RS01710 and AMB_RS01715 overlap by 1 nucleotides AMB_RS01715 and AMB_RS01720 are separated by 64 nucleotides
AMB_RS01700: AMB_RS01700 - hypothetical protein, at 374,292 to 374,747
_RS01700
AMB_RS01705: AMB_RS01705 - alpha/beta hydrolase, at 374,772 to 375,566
_RS01705
AMB_RS01710: AMB_RS01710 - glycosyl transferase, at 375,583 to 376,782
_RS01710
AMB_RS01715: AMB_RS01715 - glycosyltransferase family 9 protein, at 376,782 to 377,711
_RS01715
AMB_RS01720: AMB_RS01720 - threonine--tRNA ligase, at 377,776 to 379,692
_RS01720
Position (kb) 375
376
377 Strain fitness (log2 ratio) -1
0
1 at 374.674 kb on - strand, within AMB_RS01700 at 374.759 kb on + strand at 374.759 kb on + strand at 374.774 kb on - strand at 374.826 kb on + strand at 374.826 kb on + strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.827 kb on - strand at 375.061 kb on + strand, within AMB_RS01705 at 375.062 kb on - strand, within AMB_RS01705 at 375.266 kb on + strand, within AMB_RS01705 at 375.319 kb on + strand, within AMB_RS01705 at 375.355 kb on + strand, within AMB_RS01705 at 375.355 kb on + strand, within AMB_RS01705 at 375.419 kb on + strand, within AMB_RS01705 at 375.419 kb on + strand, within AMB_RS01705 at 375.420 kb on - strand, within AMB_RS01705 at 375.420 kb on - strand, within AMB_RS01705 at 375.439 kb on + strand, within AMB_RS01705 at 375.516 kb on + strand at 375.519 kb on + strand at 377.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_1 remove 374,674 - AMB_RS01700 0.84 +0.8 374,759 + +0.9 374,759 + -0.6 374,774 - -0.7 374,826 + -1.5 374,826 + -0.7 374,827 - +0.1 374,827 - -0.1 374,827 - -0.3 374,827 - +0.2 375,061 + AMB_RS01705 0.36 -0.5 375,062 - AMB_RS01705 0.36 +0.7 375,266 + AMB_RS01705 0.62 -0.4 375,319 + AMB_RS01705 0.69 -0.4 375,355 + AMB_RS01705 0.73 -0.1 375,355 + AMB_RS01705 0.73 +1.0 375,419 + AMB_RS01705 0.81 +0.5 375,419 + AMB_RS01705 0.81 -0.1 375,420 - AMB_RS01705 0.82 -0.7 375,420 - AMB_RS01705 0.82 -0.2 375,439 + AMB_RS01705 0.84 +0.8 375,516 + -0.5 375,519 + -0.7 377,730 + -0.8
Or see this region's nucleotide sequence