Experiment: 150_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01520 and AMB_RS01525 are separated by 15 nucleotides AMB_RS01525 and AMB_RS01530 overlap by 4 nucleotides AMB_RS01530 and AMB_RS01535 are separated by 21 nucleotides
AMB_RS01520: AMB_RS01520 - Zn-dependent protease, at 336,528 to 337,985
_RS01520
AMB_RS01525: AMB_RS01525 - RNA pyrophosphohydrolase, at 338,001 to 338,507
_RS01525
AMB_RS01530: AMB_RS01530 - divergent polysaccharide deacetylase family protein, at 338,504 to 339,943
_RS01530
AMB_RS01535: AMB_RS01535 - S41 family peptidase, at 339,965 to 341,314
_RS01535
Position (kb) 338
339
340 Strain fitness (log2 ratio) -1
0
1 at 337.552 kb on - strand, within AMB_RS01520 at 337.825 kb on + strand, within AMB_RS01520 at 337.890 kb on + strand at 337.979 kb on + strand at 337.980 kb on - strand at 338.053 kb on + strand, within AMB_RS01525 at 338.053 kb on + strand, within AMB_RS01525 at 338.054 kb on - strand, within AMB_RS01525 at 338.054 kb on - strand, within AMB_RS01525 at 338.251 kb on + strand, within AMB_RS01525 at 338.492 kb on + strand at 338.492 kb on + strand at 338.492 kb on + strand at 338.493 kb on - strand at 338.493 kb on - strand at 338.781 kb on + strand, within AMB_RS01530 at 338.781 kb on + strand, within AMB_RS01530 at 338.781 kb on + strand, within AMB_RS01530 at 338.781 kb on + strand, within AMB_RS01530 at 338.782 kb on - strand, within AMB_RS01530 at 338.782 kb on - strand, within AMB_RS01530 at 338.782 kb on - strand, within AMB_RS01530 at 338.782 kb on - strand, within AMB_RS01530 at 338.870 kb on - strand, within AMB_RS01530 at 338.871 kb on + strand, within AMB_RS01530 at 338.871 kb on + strand, within AMB_RS01530 at 338.872 kb on - strand, within AMB_RS01530 at 339.040 kb on + strand, within AMB_RS01530 at 339.040 kb on + strand, within AMB_RS01530 at 339.040 kb on + strand, within AMB_RS01530 at 339.057 kb on + strand, within AMB_RS01530 at 339.057 kb on + strand, within AMB_RS01530 at 339.193 kb on - strand, within AMB_RS01530 at 339.193 kb on - strand, within AMB_RS01530 at 339.193 kb on - strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.325 kb on - strand, within AMB_RS01530 at 339.444 kb on + strand, within AMB_RS01530 at 339.444 kb on + strand, within AMB_RS01530 at 339.445 kb on - strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.781 kb on - strand, within AMB_RS01530 at 339.781 kb on - strand, within AMB_RS01530
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_1 remove 337,552 - AMB_RS01520 0.70 -0.1 337,825 + AMB_RS01520 0.89 -1.7 337,890 + -0.3 337,979 + +0.6 337,980 - +0.2 338,053 + AMB_RS01525 0.10 -0.3 338,053 + AMB_RS01525 0.10 -0.5 338,054 - AMB_RS01525 0.10 +1.6 338,054 - AMB_RS01525 0.10 -0.6 338,251 + AMB_RS01525 0.49 -1.2 338,492 + +0.3 338,492 + -0.2 338,492 + -0.4 338,493 - -0.1 338,493 - -0.1 338,781 + AMB_RS01530 0.19 -0.5 338,781 + AMB_RS01530 0.19 +0.6 338,781 + AMB_RS01530 0.19 +1.6 338,781 + AMB_RS01530 0.19 -0.5 338,782 - AMB_RS01530 0.19 -0.6 338,782 - AMB_RS01530 0.19 -0.3 338,782 - AMB_RS01530 0.19 -1.5 338,782 - AMB_RS01530 0.19 +0.5 338,870 - AMB_RS01530 0.25 -0.2 338,871 + AMB_RS01530 0.25 -0.2 338,871 + AMB_RS01530 0.25 +0.6 338,872 - AMB_RS01530 0.26 +0.9 339,040 + AMB_RS01530 0.37 -1.0 339,040 + AMB_RS01530 0.37 +0.8 339,040 + AMB_RS01530 0.37 -0.8 339,057 + AMB_RS01530 0.38 +0.1 339,057 + AMB_RS01530 0.38 +0.5 339,193 - AMB_RS01530 0.48 -0.0 339,193 - AMB_RS01530 0.48 -0.1 339,193 - AMB_RS01530 0.48 +0.8 339,324 + AMB_RS01530 0.57 -0.2 339,324 + AMB_RS01530 0.57 -0.2 339,324 + AMB_RS01530 0.57 -0.4 339,324 + AMB_RS01530 0.57 -0.8 339,324 + AMB_RS01530 0.57 -0.0 339,325 - AMB_RS01530 0.57 -1.2 339,444 + AMB_RS01530 0.65 -0.8 339,444 + AMB_RS01530 0.65 +0.7 339,445 - AMB_RS01530 0.65 -0.7 339,780 + AMB_RS01530 0.89 -0.2 339,780 + AMB_RS01530 0.89 -0.9 339,780 + AMB_RS01530 0.89 -0.4 339,780 + AMB_RS01530 0.89 -0.7 339,781 - AMB_RS01530 0.89 +0.2 339,781 - AMB_RS01530 0.89 -0.5
Or see this region's nucleotide sequence