Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01300

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01290 and AMB_RS01295 are separated by 5 nucleotidesAMB_RS01295 and AMB_RS01300 overlap by 1 nucleotidesAMB_RS01300 and AMB_RS01305 are separated by 14 nucleotidesAMB_RS01305 and AMB_RS01310 are separated by 2 nucleotides AMB_RS01290: AMB_RS01290 - 2-pyrone-4,6-dicarboxylate hydrolase, at 285,304 to 286,221 _RS01290 AMB_RS01295: AMB_RS01295 - gfo/Idh/MocA family oxidoreductase, at 286,227 to 287,189 _RS01295 AMB_RS01300: AMB_RS01300 - aldo/keto reductase, at 287,189 to 288,178 _RS01300 AMB_RS01305: AMB_RS01305 - protocatechuate 4,5-dioxygenase subunit alpha, at 288,193 to 288,546 _RS01305 AMB_RS01310: AMB_RS01310 - protocatechuate 3,4-dioxygenase subunit beta, at 288,549 to 289,385 _RS01310 Position (kb) 287 288 289Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 286.198 kb on + strandat 286.198 kb on + strandat 286.199 kb on - strandat 286.199 kb on - strandat 286.199 kb on - strandat 286.372 kb on - strand, within AMB_RS01295at 286.561 kb on + strand, within AMB_RS01295at 286.562 kb on - strand, within AMB_RS01295at 286.686 kb on + strand, within AMB_RS01295at 286.686 kb on + strand, within AMB_RS01295at 286.687 kb on - strand, within AMB_RS01295at 286.956 kb on + strand, within AMB_RS01295at 286.957 kb on - strand, within AMB_RS01295at 286.957 kb on - strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.977 kb on + strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.978 kb on - strand, within AMB_RS01295at 286.990 kb on - strand, within AMB_RS01295at 287.143 kb on - strandat 287.215 kb on + strandat 287.215 kb on + strandat 287.216 kb on - strandat 287.261 kb on + strandat 287.262 kb on - strandat 287.351 kb on + strand, within AMB_RS01300at 287.351 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.540 kb on + strand, within AMB_RS01300at 287.541 kb on - strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.543 kb on + strand, within AMB_RS01300at 287.544 kb on - strand, within AMB_RS01300at 287.544 kb on - strand, within AMB_RS01300at 287.544 kb on - strand, within AMB_RS01300at 287.709 kb on - strand, within AMB_RS01300at 287.709 kb on - strand, within AMB_RS01300at 287.709 kb on - strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.891 kb on + strand, within AMB_RS01300at 287.892 kb on - strand, within AMB_RS01300at 288.134 kb on + strandat 288.134 kb on + strandat 288.134 kb on + strandat 288.134 kb on + strandat 288.135 kb on - strandat 288.176 kb on + strandat 288.176 kb on + strandat 288.176 kb on + strandat 288.176 kb on + strandat 288.177 kb on - strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.188 kb on + strandat 288.189 kb on - strandat 288.189 kb on - strandat 288.219 kb on - strandat 288.262 kb on + strand, within AMB_RS01305at 288.263 kb on - strand, within AMB_RS01305at 288.263 kb on - strand, within AMB_RS01305at 288.427 kb on + strand, within AMB_RS01305at 288.427 kb on + strand, within AMB_RS01305at 288.427 kb on + strand, within AMB_RS01305at 288.427 kb on + strand, within AMB_RS01305at 288.427 kb on + strand, within AMB_RS01305at 288.427 kb on + strand, within AMB_RS01305at 288.428 kb on - strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.454 kb on + strand, within AMB_RS01305at 288.455 kb on - strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.465 kb on + strand, within AMB_RS01305at 288.466 kb on - strand, within AMB_RS01305at 288.466 kb on - strand, within AMB_RS01305at 288.544 kb on + strandat 288.544 kb on + strandat 288.544 kb on + strandat 288.544 kb on + strandat 288.544 kb on + strandat 288.544 kb on + strandat 288.544 kb on + strandat 288.545 kb on - strandat 288.545 kb on - strandat 288.545 kb on - strandat 288.545 kb on - strandat 288.545 kb on - strandat 288.545 kb on - strandat 288.591 kb on + strandat 288.591 kb on + strandat 288.591 kb on + strandat 288.591 kb on + strandat 288.592 kb on - strandat 288.593 kb on + strandat 288.633 kb on + strand, within AMB_RS01310at 288.714 kb on + strand, within AMB_RS01310at 288.714 kb on + strand, within AMB_RS01310at 288.714 kb on + strand, within AMB_RS01310at 288.715 kb on - strand, within AMB_RS01310at 288.715 kb on - strand, within AMB_RS01310at 288.783 kb on + strand, within AMB_RS01310at 288.783 kb on + strand, within AMB_RS01310at 288.783 kb on + strand, within AMB_RS01310at 288.783 kb on + strand, within AMB_RS01310at 288.783 kb on + strand, within AMB_RS01310at 288.784 kb on - strand, within AMB_RS01310

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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286,198 + -1.9
286,198 + -1.5
286,199 - +0.1
286,199 - -0.4
286,199 - -0.6
286,372 - AMB_RS01295 0.15 +0.2
286,561 + AMB_RS01295 0.35 -2.6
286,562 - AMB_RS01295 0.35 -1.1
286,686 + AMB_RS01295 0.48 -0.5
286,686 + AMB_RS01295 0.48 -2.9
286,687 - AMB_RS01295 0.48 -1.4
286,956 + AMB_RS01295 0.76 -1.4
286,957 - AMB_RS01295 0.76 +0.5
286,957 - AMB_RS01295 0.76 +1.2
286,977 + AMB_RS01295 0.78 +0.9
286,977 + AMB_RS01295 0.78 -0.2
286,977 + AMB_RS01295 0.78 -1.4
286,977 + AMB_RS01295 0.78 -0.2
286,977 + AMB_RS01295 0.78 +0.6
286,977 + AMB_RS01295 0.78 -1.2
286,978 - AMB_RS01295 0.78 +0.3
286,978 - AMB_RS01295 0.78 +0.2
286,978 - AMB_RS01295 0.78 -0.2
286,978 - AMB_RS01295 0.78 -0.4
286,978 - AMB_RS01295 0.78 -0.1
286,978 - AMB_RS01295 0.78 -1.9
286,978 - AMB_RS01295 0.78 -0.9
286,978 - AMB_RS01295 0.78 -1.2
286,978 - AMB_RS01295 0.78 -0.0
286,978 - AMB_RS01295 0.78 +0.3
286,990 - AMB_RS01295 0.79 -0.1
287,143 - +0.4
287,215 + -0.5
287,215 + -1.9
287,216 - +1.0
287,261 + -0.2
287,262 - +0.2
287,351 + AMB_RS01300 0.16 -0.6
287,351 + AMB_RS01300 0.16 -1.1
287,540 + AMB_RS01300 0.35 -0.3
287,540 + AMB_RS01300 0.35 -1.8
287,540 + AMB_RS01300 0.35 -0.7
287,540 + AMB_RS01300 0.35 -0.6
287,540 + AMB_RS01300 0.35 -0.1
287,540 + AMB_RS01300 0.35 -1.0
287,540 + AMB_RS01300 0.35 -1.0
287,540 + AMB_RS01300 0.35 -0.2
287,540 + AMB_RS01300 0.35 -0.0
287,540 + AMB_RS01300 0.35 -1.6
287,540 + AMB_RS01300 0.35 -0.5
287,540 + AMB_RS01300 0.35 -0.6
287,541 - AMB_RS01300 0.36 -0.3
287,543 + AMB_RS01300 0.36 +0.2
287,543 + AMB_RS01300 0.36 -2.6
287,543 + AMB_RS01300 0.36 -0.7
287,543 + AMB_RS01300 0.36 -0.3
287,543 + AMB_RS01300 0.36 -1.2
287,543 + AMB_RS01300 0.36 -0.3
287,543 + AMB_RS01300 0.36 -0.7
287,543 + AMB_RS01300 0.36 -1.1
287,543 + AMB_RS01300 0.36 +0.0
287,543 + AMB_RS01300 0.36 -1.0
287,543 + AMB_RS01300 0.36 -1.7
287,544 - AMB_RS01300 0.36 +1.0
287,544 - AMB_RS01300 0.36 -0.6
287,544 - AMB_RS01300 0.36 -0.4
287,709 - AMB_RS01300 0.53 -0.4
287,709 - AMB_RS01300 0.53 +0.0
287,709 - AMB_RS01300 0.53 +0.0
287,891 + AMB_RS01300 0.71 -1.8
287,891 + AMB_RS01300 0.71 -2.2
287,891 + AMB_RS01300 0.71 -4.1
287,891 + AMB_RS01300 0.71 -2.4
287,891 + AMB_RS01300 0.71 -0.8
287,891 + AMB_RS01300 0.71 -1.9
287,891 + AMB_RS01300 0.71 -0.2
287,892 - AMB_RS01300 0.71 +0.9
288,134 + +0.6
288,134 + -1.8
288,134 + -3.2
288,134 + -2.1
288,135 - -0.3
288,176 + -1.2
288,176 + -1.4
288,176 + -4.9
288,176 + -2.5
288,177 - -0.3
288,188 + -0.3
288,188 + +1.1
288,188 + +0.3
288,188 + -1.1
288,188 + -1.0
288,189 - -0.4
288,189 - -0.4
288,219 - -1.7
288,262 + AMB_RS01305 0.19 -0.8
288,263 - AMB_RS01305 0.20 +0.0
288,263 - AMB_RS01305 0.20 -0.4
288,427 + AMB_RS01305 0.66 -1.7
288,427 + AMB_RS01305 0.66 -1.2
288,427 + AMB_RS01305 0.66 -1.7
288,427 + AMB_RS01305 0.66 +0.0
288,427 + AMB_RS01305 0.66 -1.4
288,427 + AMB_RS01305 0.66 -2.5
288,428 - AMB_RS01305 0.66 +0.6
288,454 + AMB_RS01305 0.74 -3.2
288,454 + AMB_RS01305 0.74 -2.2
288,454 + AMB_RS01305 0.74 -1.0
288,454 + AMB_RS01305 0.74 -0.8
288,454 + AMB_RS01305 0.74 -1.4
288,454 + AMB_RS01305 0.74 -2.2
288,454 + AMB_RS01305 0.74 -3.5
288,454 + AMB_RS01305 0.74 -1.1
288,454 + AMB_RS01305 0.74 -1.0
288,454 + AMB_RS01305 0.74 -1.7
288,455 - AMB_RS01305 0.74 +0.5
288,465 + AMB_RS01305 0.77 -1.8
288,465 + AMB_RS01305 0.77 -2.5
288,465 + AMB_RS01305 0.77 -1.4
288,465 + AMB_RS01305 0.77 -3.5
288,465 + AMB_RS01305 0.77 -3.6
288,465 + AMB_RS01305 0.77 -2.9
288,465 + AMB_RS01305 0.77 -1.4
288,465 + AMB_RS01305 0.77 -3.9
288,465 + AMB_RS01305 0.77 -3.1
288,465 + AMB_RS01305 0.77 -1.9
288,465 + AMB_RS01305 0.77 -1.6
288,466 - AMB_RS01305 0.77 -0.8
288,466 - AMB_RS01305 0.77 -0.4
288,544 + -1.4
288,544 + -1.1
288,544 + +0.7
288,544 + -0.0
288,544 + -0.3
288,544 + +0.3
288,544 + +0.4
288,545 - +0.5
288,545 - +0.3
288,545 - -0.1
288,545 - -0.6
288,545 - -1.0
288,545 - -1.2
288,591 + -0.8
288,591 + +0.0
288,591 + +0.0
288,591 + -1.1
288,592 - +0.2
288,593 + -0.8
288,633 + AMB_RS01310 0.10 -1.6
288,714 + AMB_RS01310 0.20 -0.3
288,714 + AMB_RS01310 0.20 -2.1
288,714 + AMB_RS01310 0.20 -0.5
288,715 - AMB_RS01310 0.20 -1.4
288,715 - AMB_RS01310 0.20 -1.1
288,783 + AMB_RS01310 0.28 +0.8
288,783 + AMB_RS01310 0.28 +1.0
288,783 + AMB_RS01310 0.28 -0.4
288,783 + AMB_RS01310 0.28 -0.4
288,783 + AMB_RS01310 0.28 -1.1
288,784 - AMB_RS01310 0.28 +0.3

Or see this region's nucleotide sequence