Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01250

Experiment: 150_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS01245 and AMB_RS01250 are separated by 95 nucleotidesAMB_RS01250 and AMB_RS01255 are separated by 92 nucleotidesAMB_RS01255 and AMB_RS01260 overlap by 1 nucleotides AMB_RS01245: AMB_RS01245 - methyl-accepting chemotaxis protein, at 277,114 to 278,799 _RS01245 AMB_RS01250: AMB_RS01250 - hypothetical protein, at 278,895 to 279,236 _RS01250 AMB_RS01255: AMB_RS01255 - 7-carboxy-7-deazaguanine synthase, at 279,329 to 279,937 _RS01255 AMB_RS01260: AMB_RS01260 - 6-carboxytetrahydropterin synthase, at 279,937 to 280,461 _RS01260 Position (kb) 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1at 279.189 kb on + strand, within AMB_RS01250at 279.311 kb on + strandat 279.311 kb on + strandat 279.311 kb on + strandat 279.311 kb on + strandat 279.320 kb on - strandat 279.335 kb on + strandat 279.336 kb on - strandat 279.336 kb on - strandat 279.503 kb on + strand, within AMB_RS01255at 279.504 kb on - strand, within AMB_RS01255at 279.809 kb on + strand, within AMB_RS01255at 279.810 kb on - strand, within AMB_RS01255at 279.810 kb on - strand, within AMB_RS01255at 279.853 kb on + strand, within AMB_RS01255at 279.853 kb on + strand, within AMB_RS01255at 279.853 kb on + strand, within AMB_RS01255at 279.853 kb on + strand, within AMB_RS01255at 279.853 kb on + strand, within AMB_RS01255at 279.854 kb on - strand, within AMB_RS01255at 279.854 kb on - strand, within AMB_RS01255at 279.854 kb on - strand, within AMB_RS01255at 279.854 kb on - strand, within AMB_RS01255at 279.854 kb on - strand, within AMB_RS01255at 279.854 kb on - strand, within AMB_RS01255at 279.935 kb on + strandat 279.935 kb on + strandat 279.935 kb on + strandat 280.033 kb on + strand, within AMB_RS01260at 280.033 kb on + strand, within AMB_RS01260at 280.033 kb on + strand, within AMB_RS01260at 280.033 kb on + strand, within AMB_RS01260at 280.034 kb on - strand, within AMB_RS01260at 280.034 kb on - strand, within AMB_RS01260at 280.034 kb on - strand, within AMB_RS01260at 280.034 kb on - strand, within AMB_RS01260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
remove
279,189 + AMB_RS01250 0.86 -0.0
279,311 + +0.4
279,311 + -0.6
279,311 + -0.2
279,311 + +0.6
279,320 - -0.9
279,335 + -1.9
279,336 - -0.8
279,336 - -1.1
279,503 + AMB_RS01255 0.29 -1.1
279,504 - AMB_RS01255 0.29 +0.2
279,809 + AMB_RS01255 0.79 -1.2
279,810 - AMB_RS01255 0.79 -1.7
279,810 - AMB_RS01255 0.79 -0.4
279,853 + AMB_RS01255 0.86 +0.2
279,853 + AMB_RS01255 0.86 -1.0
279,853 + AMB_RS01255 0.86 -0.4
279,853 + AMB_RS01255 0.86 -0.6
279,853 + AMB_RS01255 0.86 -0.6
279,854 - AMB_RS01255 0.86 -0.1
279,854 - AMB_RS01255 0.86 +0.8
279,854 - AMB_RS01255 0.86 +1.0
279,854 - AMB_RS01255 0.86 +0.2
279,854 - AMB_RS01255 0.86 -0.1
279,854 - AMB_RS01255 0.86 -1.2
279,935 + -1.5
279,935 + +0.9
279,935 + -0.4
280,033 + AMB_RS01260 0.18 +1.6
280,033 + AMB_RS01260 0.18 -0.2
280,033 + AMB_RS01260 0.18 -2.8
280,033 + AMB_RS01260 0.18 -0.9
280,034 - AMB_RS01260 0.18 +0.1
280,034 - AMB_RS01260 0.18 +0.6
280,034 - AMB_RS01260 0.18 -1.0
280,034 - AMB_RS01260 0.18 -0.4

Or see this region's nucleotide sequence