Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00630

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00620 and AMB_RS00625 are separated by 109 nucleotidesAMB_RS00625 and AMB_RS00630 overlap by 1 nucleotidesAMB_RS00630 and AMB_RS00635 are separated by 81 nucleotides AMB_RS00620: AMB_RS00620 - NAD-dependent dehydratase, at 142,699 to 143,727 _RS00620 AMB_RS00625: AMB_RS00625 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 143,837 to 144,346 _RS00625 AMB_RS00630: AMB_RS00630 - glycosyl transferase, at 144,346 to 145,230 _RS00630 AMB_RS00635: AMB_RS00635 - gfo/Idh/MocA family oxidoreductase, at 145,312 to 146,325 _RS00635 Position (kb) 144 145 146Strain fitness (log2 ratio) -1 0 1at 143.725 kb on + strandat 143.725 kb on + strandat 143.725 kb on + strandat 143.725 kb on + strandat 143.725 kb on + strandat 143.728 kb on + strandat 143.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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143,725 + +1.6
143,725 + -1.0
143,725 + -0.4
143,725 + -0.2
143,725 + +0.2
143,728 + -0.4
143,808 + +0.4

Or see this region's nucleotide sequence