Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00275

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00265 and AMB_RS00270 overlap by 71 nucleotidesAMB_RS00270 and AMB_RS00275 overlap by 8 nucleotidesAMB_RS00275 and AMB_RS00280 overlap by 4 nucleotidesAMB_RS00280 and AMB_RS00285 overlap by 4 nucleotides AMB_RS00265: AMB_RS00265 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 58,799 to 59,899 _RS00265 AMB_RS00270: AMB_RS00270 - hypothetical protein, at 59,829 to 60,560 _RS00270 AMB_RS00275: AMB_RS00275 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 60,553 to 61,668 _RS00275 AMB_RS00280: AMB_RS00280 - WxcM-like domain-containing protein, at 61,665 to 62,087 _RS00280 AMB_RS00285: AMB_RS00285 - NAD-dependent epimerase/dehydratase, at 62,084 to 63,028 _RS00285 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1at 59.897 kb on + strandat 59.897 kb on + strandat 59.897 kb on + strandat 60.535 kb on + strandat 60.536 kb on - strandat 62.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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59,897 + -1.8
59,897 + -0.8
59,897 + -0.6
60,535 + -0.3
60,536 - -0.4
62,058 + -0.7

Or see this region's nucleotide sequence