Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14125

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14115 and ABIE41_RS14120 are separated by 4 nucleotidesABIE41_RS14120 and ABIE41_RS14125 are separated by 43 nucleotidesABIE41_RS14125 and ABIE41_RS14130 are separated by 19 nucleotidesABIE41_RS14130 and ABIE41_RS14135 overlap by 1 nucleotides ABIE41_RS14115: ABIE41_RS14115 - nitroreductase, at 2,894,002 to 2,894,571 _RS14115 ABIE41_RS14120: ABIE41_RS14120 - flavin reductase family protein, at 2,894,576 to 2,895,181 _RS14120 ABIE41_RS14125: ABIE41_RS14125 - heavy-metal-associated domain-containing protein, at 2,895,225 to 2,895,431 _RS14125 ABIE41_RS14130: ABIE41_RS14130 - CoA ester lyase, at 2,895,451 to 2,896,329 _RS14130 ABIE41_RS14135: ABIE41_RS14135 - MaoC family dehydratase, at 2,896,329 to 2,896,826 _RS14135 Position (kb) 2895 2896Strain fitness (log2 ratio) -1 0 1at 2894.560 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.582 kb on + strandat 2894.583 kb on - strandat 2894.702 kb on + strand, within ABIE41_RS14120at 2894.708 kb on + strand, within ABIE41_RS14120at 2894.709 kb on - strand, within ABIE41_RS14120at 2895.132 kb on - strandat 2896.414 kb on + strand, within ABIE41_RS14135

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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2,894,560 + -0.2
2,894,582 + +0.7
2,894,582 + -0.2
2,894,582 + -0.6
2,894,582 + -0.4
2,894,582 + -0.7
2,894,583 - -0.4
2,894,702 + ABIE41_RS14120 0.21 +0.4
2,894,708 + ABIE41_RS14120 0.22 -0.4
2,894,709 - ABIE41_RS14120 0.22 +0.5
2,895,132 - -0.1
2,896,414 + ABIE41_RS14135 0.17 +1.2

Or see this region's nucleotide sequence