Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS12265 and ABIE41_RS12270 are separated by 69 nucleotides ABIE41_RS12270 and ABIE41_RS12275 are separated by 164 nucleotides ABIE41_RS12275 and ABIE41_RS12280 are separated by 5 nucleotides ABIE41_RS12280 and ABIE41_RS12285 are separated by 9 nucleotides
ABIE41_RS12265: ABIE41_RS12265 - methyl-accepting chemotaxis protein, at 2,510,145 to 2,511,599
_RS12265
ABIE41_RS12270: ABIE41_RS12270 - response regulator, at 2,511,669 to 2,512,136
_RS12270
ABIE41_RS12275: ABIE41_RS12275 - STAS domain-containing protein, at 2,512,301 to 2,512,582
_RS12275
ABIE41_RS12280: ABIE41_RS12280 - response regulator, at 2,512,588 to 2,512,947
_RS12280
ABIE41_RS12285: ABIE41_RS12285 - chemotaxis protein CheA, at 2,512,957 to 2,515,266
_RS12285
Position (kb)
2511
2512
2513 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2511.198 kb on + strand, within ABIE41_RS12265 at 2511.198 kb on + strand, within ABIE41_RS12265 at 2511.199 kb on - strand, within ABIE41_RS12265 at 2511.300 kb on - strand, within ABIE41_RS12265 at 2511.356 kb on + strand, within ABIE41_RS12265 at 2511.489 kb on + strand at 2511.490 kb on - strand at 2511.490 kb on - strand at 2511.597 kb on + strand at 2511.597 kb on + strand at 2511.598 kb on - strand at 2511.643 kb on + strand at 2511.643 kb on + strand at 2511.644 kb on - strand at 2511.644 kb on - strand at 2511.644 kb on - strand at 2511.644 kb on - strand at 2511.674 kb on + strand at 2511.756 kb on + strand, within ABIE41_RS12270 at 2511.756 kb on + strand, within ABIE41_RS12270 at 2511.757 kb on - strand, within ABIE41_RS12270 at 2511.757 kb on - strand, within ABIE41_RS12270 at 2511.757 kb on - strand, within ABIE41_RS12270 at 2512.074 kb on + strand, within ABIE41_RS12270 at 2512.075 kb on - strand, within ABIE41_RS12270 at 2512.075 kb on - strand, within ABIE41_RS12270 at 2512.075 kb on - strand, within ABIE41_RS12270 at 2512.315 kb on - strand at 2512.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 2,511,198 + ABIE41_RS12265 0.72 -1.3 2,511,198 + ABIE41_RS12265 0.72 -1.0 2,511,199 - ABIE41_RS12265 0.72 -2.0 2,511,300 - ABIE41_RS12265 0.79 +0.3 2,511,356 + ABIE41_RS12265 0.83 -2.6 2,511,489 + +1.1 2,511,490 - -2.4 2,511,490 - -1.1 2,511,597 + -0.1 2,511,597 + -0.5 2,511,598 - +0.0 2,511,643 + +0.0 2,511,643 + +0.4 2,511,644 - -1.0 2,511,644 - -1.9 2,511,644 - +1.6 2,511,644 - +0.1 2,511,674 + -0.7 2,511,756 + ABIE41_RS12270 0.19 -1.5 2,511,756 + ABIE41_RS12270 0.19 +0.2 2,511,757 - ABIE41_RS12270 0.19 -1.4 2,511,757 - ABIE41_RS12270 0.19 -0.9 2,511,757 - ABIE41_RS12270 0.19 +1.3 2,512,074 + ABIE41_RS12270 0.87 +0.1 2,512,075 - ABIE41_RS12270 0.87 +1.5 2,512,075 - ABIE41_RS12270 0.87 +2.2 2,512,075 - ABIE41_RS12270 0.87 -0.2 2,512,315 - +0.1 2,512,315 - -0.1
Or see this region's nucleotide sequence