Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05180

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05175 and ABIE41_RS05180 are separated by 33 nucleotidesABIE41_RS05180 and ABIE41_RS05185 overlap by 14 nucleotidesABIE41_RS05185 and ABIE41_RS05190 are separated by 12 nucleotides ABIE41_RS05175: ABIE41_RS05175 - iron ABC transporter permease, at 1,072,285 to 1,073,298 _RS05175 ABIE41_RS05180: ABIE41_RS05180 - iron ABC transporter substrate-binding protein, at 1,073,332 to 1,074,363 _RS05180 ABIE41_RS05185: ABIE41_RS05185 - SAM-dependent methyltransferase, at 1,074,350 to 1,074,829 _RS05185 ABIE41_RS05190: ABIE41_RS05190 - molybdate ABC transporter substrate-binding protein, at 1,074,842 to 1,075,630 _RS05190 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1072.416 kb on - strand, within ABIE41_RS05175at 1072.416 kb on - strand, within ABIE41_RS05175at 1072.416 kb on - strand, within ABIE41_RS05175at 1072.769 kb on + strand, within ABIE41_RS05175at 1072.769 kb on + strand, within ABIE41_RS05175at 1072.769 kb on + strand, within ABIE41_RS05175at 1072.770 kb on - strand, within ABIE41_RS05175at 1072.770 kb on - strand, within ABIE41_RS05175at 1072.785 kb on - strand, within ABIE41_RS05175at 1072.785 kb on - strand, within ABIE41_RS05175at 1072.889 kb on + strand, within ABIE41_RS05175at 1072.907 kb on - strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.961 kb on + strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1072.962 kb on - strand, within ABIE41_RS05175at 1073.387 kb on + strandat 1073.387 kb on + strandat 1073.388 kb on - strandat 1073.388 kb on - strandat 1073.388 kb on - strandat 1073.388 kb on - strandat 1073.388 kb on - strandat 1073.447 kb on + strand, within ABIE41_RS05180at 1073.448 kb on - strand, within ABIE41_RS05180at 1073.780 kb on + strand, within ABIE41_RS05180at 1073.780 kb on + strand, within ABIE41_RS05180at 1073.780 kb on + strand, within ABIE41_RS05180at 1073.780 kb on + strand, within ABIE41_RS05180at 1073.780 kb on + strand, within ABIE41_RS05180at 1073.780 kb on + strand, within ABIE41_RS05180at 1073.780 kb on + strand, within ABIE41_RS05180at 1073.781 kb on - strand, within ABIE41_RS05180at 1073.781 kb on - strand, within ABIE41_RS05180at 1073.781 kb on - strand, within ABIE41_RS05180at 1073.781 kb on - strand, within ABIE41_RS05180at 1073.781 kb on - strand, within ABIE41_RS05180at 1073.781 kb on - strand, within ABIE41_RS05180at 1073.781 kb on - strand, within ABIE41_RS05180at 1073.783 kb on + strand, within ABIE41_RS05180at 1073.783 kb on + strand, within ABIE41_RS05180at 1073.783 kb on + strand, within ABIE41_RS05180at 1073.784 kb on - strand, within ABIE41_RS05180at 1073.912 kb on + strand, within ABIE41_RS05180at 1073.913 kb on - strand, within ABIE41_RS05180at 1073.954 kb on + strand, within ABIE41_RS05180at 1073.954 kb on + strand, within ABIE41_RS05180at 1073.999 kb on + strand, within ABIE41_RS05180at 1073.999 kb on + strand, within ABIE41_RS05180at 1073.999 kb on + strand, within ABIE41_RS05180at 1073.999 kb on + strand, within ABIE41_RS05180at 1073.999 kb on + strand, within ABIE41_RS05180at 1073.999 kb on + strand, within ABIE41_RS05180at 1074.000 kb on - strand, within ABIE41_RS05180at 1074.000 kb on - strand, within ABIE41_RS05180at 1074.000 kb on - strand, within ABIE41_RS05180at 1074.000 kb on - strand, within ABIE41_RS05180at 1074.194 kb on + strand, within ABIE41_RS05180at 1074.195 kb on - strand, within ABIE41_RS05180at 1074.195 kb on - strand, within ABIE41_RS05180at 1074.195 kb on - strand, within ABIE41_RS05180at 1074.603 kb on + strand, within ABIE41_RS05185at 1074.603 kb on + strand, within ABIE41_RS05185at 1074.603 kb on + strand, within ABIE41_RS05185at 1074.604 kb on - strand, within ABIE41_RS05185at 1074.975 kb on + strand, within ABIE41_RS05190at 1075.062 kb on + strand, within ABIE41_RS05190at 1075.107 kb on + strand, within ABIE41_RS05190at 1075.107 kb on + strand, within ABIE41_RS05190at 1075.108 kb on - strand, within ABIE41_RS05190at 1075.108 kb on - strand, within ABIE41_RS05190at 1075.233 kb on + strand, within ABIE41_RS05190at 1075.234 kb on - strand, within ABIE41_RS05190at 1075.294 kb on + strand, within ABIE41_RS05190at 1075.294 kb on + strand, within ABIE41_RS05190at 1075.294 kb on + strand, within ABIE41_RS05190at 1075.294 kb on + strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190at 1075.295 kb on - strand, within ABIE41_RS05190

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,072,416 - ABIE41_RS05175 0.13 -1.1
1,072,416 - ABIE41_RS05175 0.13 +2.0
1,072,416 - ABIE41_RS05175 0.13 +1.6
1,072,769 + ABIE41_RS05175 0.48 -0.1
1,072,769 + ABIE41_RS05175 0.48 +0.2
1,072,769 + ABIE41_RS05175 0.48 +0.8
1,072,770 - ABIE41_RS05175 0.48 +1.5
1,072,770 - ABIE41_RS05175 0.48 -0.6
1,072,785 - ABIE41_RS05175 0.49 -1.0
1,072,785 - ABIE41_RS05175 0.49 -1.8
1,072,889 + ABIE41_RS05175 0.60 +0.4
1,072,907 - ABIE41_RS05175 0.61 -2.2
1,072,961 + ABIE41_RS05175 0.67 -0.0
1,072,961 + ABIE41_RS05175 0.67 +0.1
1,072,961 + ABIE41_RS05175 0.67 -1.9
1,072,961 + ABIE41_RS05175 0.67 -0.3
1,072,961 + ABIE41_RS05175 0.67 +0.6
1,072,961 + ABIE41_RS05175 0.67 -0.1
1,072,961 + ABIE41_RS05175 0.67 -1.3
1,072,961 + ABIE41_RS05175 0.67 +1.0
1,072,961 + ABIE41_RS05175 0.67 +0.3
1,072,961 + ABIE41_RS05175 0.67 +0.4
1,072,961 + ABIE41_RS05175 0.67 +0.8
1,072,961 + ABIE41_RS05175 0.67 +1.5
1,072,961 + ABIE41_RS05175 0.67 -0.7
1,072,961 + ABIE41_RS05175 0.67 +0.5
1,072,961 + ABIE41_RS05175 0.67 +0.5
1,072,961 + ABIE41_RS05175 0.67 +0.1
1,072,962 - ABIE41_RS05175 0.67 +2.2
1,072,962 - ABIE41_RS05175 0.67 +0.1
1,072,962 - ABIE41_RS05175 0.67 +0.0
1,072,962 - ABIE41_RS05175 0.67 -0.9
1,072,962 - ABIE41_RS05175 0.67 -0.4
1,072,962 - ABIE41_RS05175 0.67 -0.7
1,072,962 - ABIE41_RS05175 0.67 -1.2
1,072,962 - ABIE41_RS05175 0.67 +0.9
1,073,387 + +1.0
1,073,387 + -1.2
1,073,388 - -1.0
1,073,388 - -0.2
1,073,388 - -0.4
1,073,388 - +2.9
1,073,388 - +0.0
1,073,447 + ABIE41_RS05180 0.11 -0.4
1,073,448 - ABIE41_RS05180 0.11 +0.3
1,073,780 + ABIE41_RS05180 0.43 -0.4
1,073,780 + ABIE41_RS05180 0.43 -0.1
1,073,780 + ABIE41_RS05180 0.43 -0.3
1,073,780 + ABIE41_RS05180 0.43 +0.8
1,073,780 + ABIE41_RS05180 0.43 -1.4
1,073,780 + ABIE41_RS05180 0.43 -1.3
1,073,780 + ABIE41_RS05180 0.43 -1.5
1,073,781 - ABIE41_RS05180 0.44 +0.4
1,073,781 - ABIE41_RS05180 0.44 -0.5
1,073,781 - ABIE41_RS05180 0.44 +0.4
1,073,781 - ABIE41_RS05180 0.44 +1.1
1,073,781 - ABIE41_RS05180 0.44 -0.0
1,073,781 - ABIE41_RS05180 0.44 -0.9
1,073,781 - ABIE41_RS05180 0.44 +1.4
1,073,783 + ABIE41_RS05180 0.44 +0.3
1,073,783 + ABIE41_RS05180 0.44 -0.0
1,073,783 + ABIE41_RS05180 0.44 +0.8
1,073,784 - ABIE41_RS05180 0.44 -0.8
1,073,912 + ABIE41_RS05180 0.56 -0.1
1,073,913 - ABIE41_RS05180 0.56 +0.1
1,073,954 + ABIE41_RS05180 0.60 +3.8
1,073,954 + ABIE41_RS05180 0.60 +0.8
1,073,999 + ABIE41_RS05180 0.65 +0.6
1,073,999 + ABIE41_RS05180 0.65 +0.3
1,073,999 + ABIE41_RS05180 0.65 -1.4
1,073,999 + ABIE41_RS05180 0.65 +0.5
1,073,999 + ABIE41_RS05180 0.65 +1.5
1,073,999 + ABIE41_RS05180 0.65 -0.6
1,074,000 - ABIE41_RS05180 0.65 -0.2
1,074,000 - ABIE41_RS05180 0.65 +0.8
1,074,000 - ABIE41_RS05180 0.65 -0.2
1,074,000 - ABIE41_RS05180 0.65 -1.6
1,074,194 + ABIE41_RS05180 0.84 -0.1
1,074,195 - ABIE41_RS05180 0.84 -0.5
1,074,195 - ABIE41_RS05180 0.84 -0.8
1,074,195 - ABIE41_RS05180 0.84 -1.5
1,074,603 + ABIE41_RS05185 0.53 -0.8
1,074,603 + ABIE41_RS05185 0.53 -0.4
1,074,603 + ABIE41_RS05185 0.53 -0.6
1,074,604 - ABIE41_RS05185 0.53 -0.3
1,074,975 + ABIE41_RS05190 0.17 +0.2
1,075,062 + ABIE41_RS05190 0.28 +0.3
1,075,107 + ABIE41_RS05190 0.34 +0.2
1,075,107 + ABIE41_RS05190 0.34 -1.6
1,075,108 - ABIE41_RS05190 0.34 +0.6
1,075,108 - ABIE41_RS05190 0.34 -0.5
1,075,233 + ABIE41_RS05190 0.50 -0.1
1,075,234 - ABIE41_RS05190 0.50 -0.4
1,075,294 + ABIE41_RS05190 0.57 -0.1
1,075,294 + ABIE41_RS05190 0.57 +1.8
1,075,294 + ABIE41_RS05190 0.57 -0.3
1,075,294 + ABIE41_RS05190 0.57 +0.3
1,075,295 - ABIE41_RS05190 0.57 +0.5
1,075,295 - ABIE41_RS05190 0.57 -0.4
1,075,295 - ABIE41_RS05190 0.57 -0.1
1,075,295 - ABIE41_RS05190 0.57 -0.7
1,075,295 - ABIE41_RS05190 0.57 -0.7
1,075,295 - ABIE41_RS05190 0.57 -0.5
1,075,295 - ABIE41_RS05190 0.57 -0.5
1,075,295 - ABIE41_RS05190 0.57 +0.5
1,075,295 - ABIE41_RS05190 0.57 +0.7

Or see this region's nucleotide sequence