Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28670 and ABIE40_RS28675 are separated by 126 nucleotides ABIE40_RS28675 and ABIE40_RS28680 are separated by 23 nucleotides ABIE40_RS28680 and ABIE40_RS28685 overlap by 83 nucleotides
ABIE40_RS28670: ABIE40_RS28670 - cyclodeaminase/cyclohydrolase family protein, at 432,182 to 432,778
_RS28670
ABIE40_RS28675: ABIE40_RS28675 - DUF4142 domain-containing protein, at 432,905 to 433,450
_RS28675
ABIE40_RS28680: ABIE40_RS28680 - alpha/beta hydrolase, at 433,474 to 434,652
_RS28680
ABIE40_RS28685: ABIE40_RS28685 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 434,570 to 436,366
_RS28685
Position (kb) 433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 432.625 kb on + strand, within ABIE40_RS28670 at 432.625 kb on + strand, within ABIE40_RS28670 at 432.626 kb on - strand, within ABIE40_RS28670 at 432.626 kb on - strand, within ABIE40_RS28670 at 432.749 kb on - strand at 432.749 kb on - strand at 432.767 kb on + strand at 432.907 kb on - strand at 432.980 kb on + strand, within ABIE40_RS28675 at 432.980 kb on + strand, within ABIE40_RS28675 at 432.980 kb on + strand, within ABIE40_RS28675 at 432.980 kb on + strand, within ABIE40_RS28675 at 432.980 kb on + strand, within ABIE40_RS28675 at 433.065 kb on + strand, within ABIE40_RS28675 at 433.205 kb on - strand, within ABIE40_RS28675 at 433.586 kb on + strand at 433.634 kb on + strand, within ABIE40_RS28680 at 433.635 kb on - strand, within ABIE40_RS28680 at 433.836 kb on + strand, within ABIE40_RS28680 at 433.836 kb on + strand, within ABIE40_RS28680 at 433.836 kb on + strand, within ABIE40_RS28680 at 433.836 kb on + strand, within ABIE40_RS28680 at 433.836 kb on + strand, within ABIE40_RS28680 at 433.837 kb on - strand, within ABIE40_RS28680 at 433.837 kb on - strand, within ABIE40_RS28680 at 433.843 kb on - strand, within ABIE40_RS28680 at 433.966 kb on - strand, within ABIE40_RS28680 at 434.016 kb on - strand, within ABIE40_RS28680 at 434.072 kb on + strand, within ABIE40_RS28680 at 434.072 kb on + strand, within ABIE40_RS28680 at 434.072 kb on + strand, within ABIE40_RS28680 at 434.073 kb on - strand, within ABIE40_RS28680 at 434.077 kb on + strand, within ABIE40_RS28680 at 434.077 kb on + strand, within ABIE40_RS28680 at 434.132 kb on + strand, within ABIE40_RS28680 at 434.132 kb on + strand, within ABIE40_RS28680 at 434.133 kb on - strand, within ABIE40_RS28680 at 434.213 kb on + strand, within ABIE40_RS28680 at 434.213 kb on + strand, within ABIE40_RS28680 at 434.213 kb on + strand, within ABIE40_RS28680 at 434.213 kb on + strand, within ABIE40_RS28680 at 434.214 kb on - strand, within ABIE40_RS28680 at 434.458 kb on - strand, within ABIE40_RS28680 at 434.683 kb on + strand at 434.721 kb on + strand at 434.722 kb on - strand at 434.763 kb on + strand, within ABIE40_RS28685 at 434.763 kb on + strand, within ABIE40_RS28685 at 434.822 kb on + strand, within ABIE40_RS28685 at 434.823 kb on - strand, within ABIE40_RS28685 at 434.823 kb on - strand, within ABIE40_RS28685 at 434.823 kb on - strand, within ABIE40_RS28685 at 434.870 kb on - strand, within ABIE40_RS28685 at 434.937 kb on + strand, within ABIE40_RS28685 at 434.995 kb on - strand, within ABIE40_RS28685 at 434.995 kb on - strand, within ABIE40_RS28685 at 435.047 kb on + strand, within ABIE40_RS28685 at 435.048 kb on - strand, within ABIE40_RS28685 at 435.151 kb on + strand, within ABIE40_RS28685 at 435.195 kb on + strand, within ABIE40_RS28685 at 435.423 kb on + strand, within ABIE40_RS28685 at 435.424 kb on - strand, within ABIE40_RS28685 at 435.424 kb on - strand, within ABIE40_RS28685 at 435.450 kb on + strand, within ABIE40_RS28685 at 435.486 kb on + strand, within ABIE40_RS28685 at 435.561 kb on + strand, within ABIE40_RS28685 at 435.561 kb on + strand, within ABIE40_RS28685 at 435.561 kb on + strand, within ABIE40_RS28685 at 435.598 kb on - strand, within ABIE40_RS28685
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 432,625 + ABIE40_RS28670 0.74 -0.8 432,625 + ABIE40_RS28670 0.74 +1.7 432,626 - ABIE40_RS28670 0.74 -0.4 432,626 - ABIE40_RS28670 0.74 -1.3 432,749 - -1.9 432,749 - -0.5 432,767 + -0.5 432,907 - -0.4 432,980 + ABIE40_RS28675 0.14 +3.0 432,980 + ABIE40_RS28675 0.14 +0.4 432,980 + ABIE40_RS28675 0.14 -2.1 432,980 + ABIE40_RS28675 0.14 -0.3 432,980 + ABIE40_RS28675 0.14 +1.6 433,065 + ABIE40_RS28675 0.29 -0.1 433,205 - ABIE40_RS28675 0.55 +1.1 433,586 + +1.0 433,634 + ABIE40_RS28680 0.14 -0.3 433,635 - ABIE40_RS28680 0.14 -0.3 433,836 + ABIE40_RS28680 0.31 -0.9 433,836 + ABIE40_RS28680 0.31 -2.0 433,836 + ABIE40_RS28680 0.31 -0.2 433,836 + ABIE40_RS28680 0.31 +0.4 433,836 + ABIE40_RS28680 0.31 +0.3 433,837 - ABIE40_RS28680 0.31 -0.0 433,837 - ABIE40_RS28680 0.31 +0.5 433,843 - ABIE40_RS28680 0.31 +0.0 433,966 - ABIE40_RS28680 0.42 +0.7 434,016 - ABIE40_RS28680 0.46 -0.2 434,072 + ABIE40_RS28680 0.51 +0.9 434,072 + ABIE40_RS28680 0.51 -0.6 434,072 + ABIE40_RS28680 0.51 +0.6 434,073 - ABIE40_RS28680 0.51 -0.1 434,077 + ABIE40_RS28680 0.51 -0.3 434,077 + ABIE40_RS28680 0.51 +1.1 434,132 + ABIE40_RS28680 0.56 -1.1 434,132 + ABIE40_RS28680 0.56 +0.4 434,133 - ABIE40_RS28680 0.56 -0.1 434,213 + ABIE40_RS28680 0.63 -1.1 434,213 + ABIE40_RS28680 0.63 +1.1 434,213 + ABIE40_RS28680 0.63 +0.3 434,213 + ABIE40_RS28680 0.63 +0.7 434,214 - ABIE40_RS28680 0.63 +0.0 434,458 - ABIE40_RS28680 0.83 -0.1 434,683 + -0.8 434,721 + +1.0 434,722 - +0.6 434,763 + ABIE40_RS28685 0.11 +0.7 434,763 + ABIE40_RS28685 0.11 -1.2 434,822 + ABIE40_RS28685 0.14 -0.5 434,823 - ABIE40_RS28685 0.14 -0.0 434,823 - ABIE40_RS28685 0.14 -0.7 434,823 - ABIE40_RS28685 0.14 -1.1 434,870 - ABIE40_RS28685 0.17 +0.8 434,937 + ABIE40_RS28685 0.20 +0.6 434,995 - ABIE40_RS28685 0.24 -0.8 434,995 - ABIE40_RS28685 0.24 -0.3 435,047 + ABIE40_RS28685 0.27 +0.1 435,048 - ABIE40_RS28685 0.27 -1.2 435,151 + ABIE40_RS28685 0.32 -0.5 435,195 + ABIE40_RS28685 0.35 -0.5 435,423 + ABIE40_RS28685 0.47 -0.3 435,424 - ABIE40_RS28685 0.48 -0.0 435,424 - ABIE40_RS28685 0.48 -0.3 435,450 + ABIE40_RS28685 0.49 -0.3 435,486 + ABIE40_RS28685 0.51 +0.1 435,561 + ABIE40_RS28685 0.55 +1.2 435,561 + ABIE40_RS28685 0.55 -0.4 435,561 + ABIE40_RS28685 0.55 +0.1 435,598 - ABIE40_RS28685 0.57 -0.5
Or see this region's nucleotide sequence