Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28060 and ABIE40_RS28065 are separated by 71 nucleotides ABIE40_RS28065 and ABIE40_RS28070 overlap by 4 nucleotides ABIE40_RS28070 and ABIE40_RS28075 are separated by 125 nucleotides
ABIE40_RS28060: ABIE40_RS28060 - damage-inducible mutagenesis protein, at 320,868 to 321,610
_RS28060
ABIE40_RS28065: ABIE40_RS28065 - hypothetical protein, at 321,682 to 321,984
_RS28065
ABIE40_RS28070: ABIE40_RS28070 - AAA family ATPase, at 321,981 to 323,168
_RS28070
ABIE40_RS28075: ABIE40_RS28075 - methyl-accepting chemotaxis protein, at 323,294 to 324,129
_RS28075
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 321.021 kb on + strand, within ABIE40_RS28060 at 321.021 kb on + strand, within ABIE40_RS28060 at 321.021 kb on + strand, within ABIE40_RS28060 at 321.022 kb on - strand, within ABIE40_RS28060 at 321.196 kb on - strand, within ABIE40_RS28060 at 321.196 kb on - strand, within ABIE40_RS28060 at 321.412 kb on + strand, within ABIE40_RS28060 at 321.413 kb on - strand, within ABIE40_RS28060 at 321.465 kb on + strand, within ABIE40_RS28060 at 321.465 kb on + strand, within ABIE40_RS28060 at 321.465 kb on + strand, within ABIE40_RS28060 at 321.466 kb on - strand, within ABIE40_RS28060 at 321.635 kb on - strand at 321.676 kb on - strand at 321.733 kb on + strand, within ABIE40_RS28065 at 321.734 kb on - strand, within ABIE40_RS28065 at 321.734 kb on - strand, within ABIE40_RS28065 at 322.210 kb on + strand, within ABIE40_RS28070 at 322.211 kb on - strand, within ABIE40_RS28070 at 322.266 kb on - strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.633 kb on - strand, within ABIE40_RS28070 at 322.633 kb on - strand, within ABIE40_RS28070 at 322.633 kb on - strand, within ABIE40_RS28070 at 322.686 kb on + strand, within ABIE40_RS28070 at 322.688 kb on - strand, within ABIE40_RS28070 at 322.729 kb on + strand, within ABIE40_RS28070 at 322.740 kb on + strand, within ABIE40_RS28070 at 322.740 kb on + strand, within ABIE40_RS28070 at 322.741 kb on - strand, within ABIE40_RS28070 at 322.741 kb on - strand, within ABIE40_RS28070 at 323.076 kb on + strand at 323.199 kb on - strand at 323.229 kb on + strand at 323.303 kb on - strand at 323.413 kb on - strand, within ABIE40_RS28075 at 323.413 kb on - strand, within ABIE40_RS28075 at 323.599 kb on - strand, within ABIE40_RS28075 at 323.691 kb on + strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.695 kb on - strand, within ABIE40_RS28075 at 324.143 kb on + strand at 324.143 kb on + strand at 324.143 kb on + strand at 324.143 kb on + strand at 324.144 kb on - strand at 324.147 kb on + strand at 324.147 kb on + strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 321,021 + ABIE40_RS28060 0.21 +1.5 321,021 + ABIE40_RS28060 0.21 -1.2 321,021 + ABIE40_RS28060 0.21 -0.9 321,022 - ABIE40_RS28060 0.21 +1.2 321,196 - ABIE40_RS28060 0.44 -0.1 321,196 - ABIE40_RS28060 0.44 -0.8 321,412 + ABIE40_RS28060 0.73 -0.3 321,413 - ABIE40_RS28060 0.73 -2.2 321,465 + ABIE40_RS28060 0.80 -1.7 321,465 + ABIE40_RS28060 0.80 -0.6 321,465 + ABIE40_RS28060 0.80 +0.5 321,466 - ABIE40_RS28060 0.80 +0.7 321,635 - -1.3 321,676 - +0.7 321,733 + ABIE40_RS28065 0.17 +1.4 321,734 - ABIE40_RS28065 0.17 +1.3 321,734 - ABIE40_RS28065 0.17 -0.1 322,210 + ABIE40_RS28070 0.19 -0.6 322,211 - ABIE40_RS28070 0.19 +0.1 322,266 - ABIE40_RS28070 0.24 -1.0 322,632 + ABIE40_RS28070 0.55 -0.3 322,632 + ABIE40_RS28070 0.55 -0.6 322,632 + ABIE40_RS28070 0.55 -0.6 322,632 + ABIE40_RS28070 0.55 -1.3 322,632 + ABIE40_RS28070 0.55 -0.6 322,633 - ABIE40_RS28070 0.55 +0.8 322,633 - ABIE40_RS28070 0.55 +0.0 322,633 - ABIE40_RS28070 0.55 -0.0 322,686 + ABIE40_RS28070 0.59 -0.3 322,688 - ABIE40_RS28070 0.60 -0.7 322,729 + ABIE40_RS28070 0.63 -0.5 322,740 + ABIE40_RS28070 0.64 -0.7 322,740 + ABIE40_RS28070 0.64 +0.2 322,741 - ABIE40_RS28070 0.64 +0.5 322,741 - ABIE40_RS28070 0.64 +0.9 323,076 + -0.0 323,199 - -0.1 323,229 + -0.3 323,303 - -0.1 323,413 - ABIE40_RS28075 0.14 +1.1 323,413 - ABIE40_RS28075 0.14 +2.2 323,599 - ABIE40_RS28075 0.36 -0.8 323,691 + ABIE40_RS28075 0.47 +0.1 323,692 - ABIE40_RS28075 0.48 -0.2 323,692 - ABIE40_RS28075 0.48 -0.6 323,692 - ABIE40_RS28075 0.48 +0.3 323,692 - ABIE40_RS28075 0.48 -0.5 323,695 - ABIE40_RS28075 0.48 -0.1 324,143 + -0.1 324,143 + +0.9 324,143 + +0.9 324,143 + -0.2 324,144 - -0.3 324,147 + +0.1 324,147 + -1.0 324,148 - +1.0 324,148 - +0.1 324,148 - -0.2 324,148 - -0.4 324,148 - -0.2 324,148 - -1.1 324,148 - -1.2
Or see this region's nucleotide sequence