Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23135

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23125 and ABID97_RS23130 are separated by 19 nucleotidesABID97_RS23130 and ABID97_RS23135 are separated by 63 nucleotidesABID97_RS23135 and ABID97_RS23140 are separated by 19 nucleotidesABID97_RS23140 and ABID97_RS23145 overlap by 4 nucleotides ABID97_RS23125: ABID97_RS23125 - AAA family ATPase, at 4,782,563 to 4,783,741 _RS23125 ABID97_RS23130: ABID97_RS23130 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 4,783,761 to 4,784,504 _RS23130 ABID97_RS23135: ABID97_RS23135 - imidazole glycerol phosphate synthase subunit HisH, at 4,784,568 to 4,785,224 _RS23135 ABID97_RS23140: ABID97_RS23140 - imidazoleglycerol-phosphate dehydratase HisB, at 4,785,244 to 4,785,867 _RS23140 ABID97_RS23145: ABID97_RS23145 - histidinol-phosphate transaminase, at 4,785,864 to 4,786,952 _RS23145 Position (kb) 4784 4785 4786Strain fitness (log2 ratio) -1 0 1 2 3at 4783.613 kb on + strand, within ABID97_RS23125at 4783.630 kb on - strandat 4783.713 kb on + strandat 4783.713 kb on + strandat 4783.749 kb on + strandat 4784.562 kb on - strandat 4784.562 kb on - strandat 4784.562 kb on - strandat 4784.564 kb on - strandat 4784.564 kb on - strandat 4784.564 kb on - strandat 4785.868 kb on - strandat 4785.868 kb on - strandat 4785.868 kb on - strandat 4785.868 kb on - strandat 4785.959 kb on + strandat 4785.960 kb on - strandat 4786.198 kb on + strand, within ABID97_RS23145at 4786.198 kb on + strand, within ABID97_RS23145at 4786.198 kb on + strand, within ABID97_RS23145at 4786.199 kb on - strand, within ABID97_RS23145

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,783,613 + ABID97_RS23125 0.89 +0.2
4,783,630 - -0.1
4,783,713 + -0.3
4,783,713 + +0.2
4,783,749 + +0.0
4,784,562 - +0.1
4,784,562 - +0.2
4,784,562 - -0.3
4,784,564 - -0.6
4,784,564 - -0.5
4,784,564 - +0.2
4,785,868 - +0.0
4,785,868 - +3.2
4,785,868 - -0.1
4,785,868 - +0.3
4,785,959 + -0.2
4,785,960 - +0.6
4,786,198 + ABID97_RS23145 0.31 +0.7
4,786,198 + ABID97_RS23145 0.31 +1.2
4,786,198 + ABID97_RS23145 0.31 -0.6
4,786,199 - ABID97_RS23145 0.31 +0.1

Or see this region's nucleotide sequence