Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19600 and ABID97_RS19605 are separated by 55 nucleotides ABID97_RS19605 and ABID97_RS19610 are separated by 35 nucleotides ABID97_RS19610 and ABID97_RS19615 are separated by 89 nucleotides
ABID97_RS19600: ABID97_RS19600 - TRAP transporter substrate-binding protein, at 4,049,150 to 4,050,115
_RS19600
ABID97_RS19605: ABID97_RS19605 - MFS transporter, at 4,050,171 to 4,051,463
_RS19605
ABID97_RS19610: ABID97_RS19610 - putative hydro-lyase, at 4,051,499 to 4,052,314
_RS19610
ABID97_RS19615: ABID97_RS19615 - LysR family transcriptional regulator, at 4,052,404 to 4,053,309
_RS19615
Position (kb) 4050
4051
4052 Strain fitness (log2 ratio) -1
0
1
2
3 at 4049.466 kb on + strand, within ABID97_RS19600 at 4049.466 kb on + strand, within ABID97_RS19600 at 4049.466 kb on + strand, within ABID97_RS19600 at 4049.467 kb on - strand, within ABID97_RS19600 at 4049.467 kb on - strand, within ABID97_RS19600 at 4049.626 kb on - strand, within ABID97_RS19600 at 4049.626 kb on - strand, within ABID97_RS19600 at 4049.682 kb on + strand, within ABID97_RS19600 at 4049.793 kb on + strand, within ABID97_RS19600 at 4049.923 kb on - strand, within ABID97_RS19600 at 4050.122 kb on + strand at 4050.123 kb on - strand at 4050.239 kb on - strand at 4050.496 kb on + strand, within ABID97_RS19605 at 4050.497 kb on - strand, within ABID97_RS19605 at 4050.502 kb on + strand, within ABID97_RS19605 at 4050.502 kb on + strand, within ABID97_RS19605 at 4050.502 kb on + strand, within ABID97_RS19605 at 4050.502 kb on + strand, within ABID97_RS19605 at 4050.586 kb on + strand, within ABID97_RS19605 at 4050.587 kb on - strand, within ABID97_RS19605 at 4050.694 kb on + strand, within ABID97_RS19605 at 4050.694 kb on + strand, within ABID97_RS19605 at 4050.823 kb on + strand, within ABID97_RS19605 at 4050.911 kb on - strand, within ABID97_RS19605 at 4051.189 kb on + strand, within ABID97_RS19605 at 4051.190 kb on - strand, within ABID97_RS19605 at 4051.325 kb on - strand, within ABID97_RS19605 at 4051.327 kb on + strand, within ABID97_RS19605 at 4051.632 kb on - strand, within ABID97_RS19610 at 4051.857 kb on + strand, within ABID97_RS19610 at 4052.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,049,466 + ABID97_RS19600 0.33 -0.3 4,049,466 + ABID97_RS19600 0.33 -0.8 4,049,466 + ABID97_RS19600 0.33 -1.2 4,049,467 - ABID97_RS19600 0.33 -0.4 4,049,467 - ABID97_RS19600 0.33 -0.3 4,049,626 - ABID97_RS19600 0.49 -0.5 4,049,626 - ABID97_RS19600 0.49 -0.0 4,049,682 + ABID97_RS19600 0.55 +3.2 4,049,793 + ABID97_RS19600 0.67 -1.0 4,049,923 - ABID97_RS19600 0.80 -0.4 4,050,122 + +0.2 4,050,123 - +0.6 4,050,239 - -0.1 4,050,496 + ABID97_RS19605 0.25 -0.1 4,050,497 - ABID97_RS19605 0.25 +0.3 4,050,502 + ABID97_RS19605 0.26 +1.4 4,050,502 + ABID97_RS19605 0.26 -0.2 4,050,502 + ABID97_RS19605 0.26 +0.2 4,050,502 + ABID97_RS19605 0.26 +0.5 4,050,586 + ABID97_RS19605 0.32 -0.3 4,050,587 - ABID97_RS19605 0.32 +0.0 4,050,694 + ABID97_RS19605 0.40 +0.1 4,050,694 + ABID97_RS19605 0.40 -0.5 4,050,823 + ABID97_RS19605 0.50 +0.4 4,050,911 - ABID97_RS19605 0.57 -1.4 4,051,189 + ABID97_RS19605 0.79 +0.7 4,051,190 - ABID97_RS19605 0.79 -0.5 4,051,325 - ABID97_RS19605 0.89 +1.3 4,051,327 + ABID97_RS19605 0.89 +0.8 4,051,632 - ABID97_RS19610 0.16 +0.4 4,051,857 + ABID97_RS19610 0.44 +0.1 4,052,291 + -0.5
Or see this region's nucleotide sequence