Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10595 and ABID97_RS10600 are separated by 11 nucleotides ABID97_RS10600 and ABID97_RS10605 are separated by 32 nucleotides
ABID97_RS10595: ABID97_RS10595 - sodium:proton antiporter, at 2,202,803 to 2,204,215
_RS10595
ABID97_RS10600: ABID97_RS10600 - D-glycerate dehydrogenase, at 2,204,227 to 2,205,213
_RS10600
ABID97_RS10605: ABID97_RS10605 - DNA recombination protein RmuC, at 2,205,246 to 2,206,625
_RS10605
Position (kb)
2204
2205
2206 Strain fitness (log2 ratio)
-2
-1
0
1 at 2203.469 kb on + strand, within ABID97_RS10595 at 2203.469 kb on + strand, within ABID97_RS10595 at 2203.469 kb on + strand, within ABID97_RS10595 at 2203.469 kb on + strand, within ABID97_RS10595 at 2203.469 kb on + strand, within ABID97_RS10595 at 2203.469 kb on + strand, within ABID97_RS10595 at 2203.470 kb on - strand, within ABID97_RS10595 at 2203.491 kb on - strand, within ABID97_RS10595 at 2203.907 kb on + strand, within ABID97_RS10595 at 2203.907 kb on + strand, within ABID97_RS10595 at 2203.907 kb on + strand, within ABID97_RS10595 at 2203.907 kb on + strand, within ABID97_RS10595 at 2203.907 kb on + strand, within ABID97_RS10595 at 2203.907 kb on + strand, within ABID97_RS10595 at 2203.908 kb on - strand, within ABID97_RS10595 at 2203.908 kb on - strand, within ABID97_RS10595 at 2203.908 kb on - strand, within ABID97_RS10595 at 2203.959 kb on - strand, within ABID97_RS10595 at 2204.012 kb on + strand, within ABID97_RS10595 at 2204.012 kb on + strand, within ABID97_RS10595 at 2204.013 kb on - strand, within ABID97_RS10595 at 2204.069 kb on + strand, within ABID97_RS10595 at 2204.069 kb on + strand, within ABID97_RS10595 at 2204.070 kb on - strand, within ABID97_RS10595 at 2204.462 kb on - strand, within ABID97_RS10600 at 2204.462 kb on - strand, within ABID97_RS10600 at 2204.462 kb on - strand, within ABID97_RS10600 at 2204.635 kb on + strand, within ABID97_RS10600 at 2204.636 kb on - strand, within ABID97_RS10600 at 2204.636 kb on - strand, within ABID97_RS10600 at 2204.752 kb on + strand, within ABID97_RS10600 at 2204.753 kb on - strand, within ABID97_RS10600 at 2204.753 kb on - strand, within ABID97_RS10600 at 2204.806 kb on + strand, within ABID97_RS10600 at 2205.211 kb on + strand at 2205.942 kb on + strand, within ABID97_RS10605 at 2205.942 kb on + strand, within ABID97_RS10605 at 2206.072 kb on - strand, within ABID97_RS10605
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,203,469 + ABID97_RS10595 0.47 -0.6 2,203,469 + ABID97_RS10595 0.47 -0.5 2,203,469 + ABID97_RS10595 0.47 -0.4 2,203,469 + ABID97_RS10595 0.47 +0.3 2,203,469 + ABID97_RS10595 0.47 -1.8 2,203,469 + ABID97_RS10595 0.47 -0.2 2,203,470 - ABID97_RS10595 0.47 -1.1 2,203,491 - ABID97_RS10595 0.49 -0.3 2,203,907 + ABID97_RS10595 0.78 +0.6 2,203,907 + ABID97_RS10595 0.78 -0.4 2,203,907 + ABID97_RS10595 0.78 +0.5 2,203,907 + ABID97_RS10595 0.78 -0.5 2,203,907 + ABID97_RS10595 0.78 -0.4 2,203,907 + ABID97_RS10595 0.78 -0.5 2,203,908 - ABID97_RS10595 0.78 -0.2 2,203,908 - ABID97_RS10595 0.78 -0.5 2,203,908 - ABID97_RS10595 0.78 +0.3 2,203,959 - ABID97_RS10595 0.82 -0.5 2,204,012 + ABID97_RS10595 0.86 -0.2 2,204,012 + ABID97_RS10595 0.86 +0.1 2,204,013 - ABID97_RS10595 0.86 -0.0 2,204,069 + ABID97_RS10595 0.90 +0.3 2,204,069 + ABID97_RS10595 0.90 -1.8 2,204,070 - ABID97_RS10595 0.90 +0.1 2,204,462 - ABID97_RS10600 0.24 -0.3 2,204,462 - ABID97_RS10600 0.24 -0.5 2,204,462 - ABID97_RS10600 0.24 -0.1 2,204,635 + ABID97_RS10600 0.41 -0.7 2,204,636 - ABID97_RS10600 0.41 -1.3 2,204,636 - ABID97_RS10600 0.41 -0.6 2,204,752 + ABID97_RS10600 0.53 -0.0 2,204,753 - ABID97_RS10600 0.53 -0.4 2,204,753 - ABID97_RS10600 0.53 -0.8 2,204,806 + ABID97_RS10600 0.59 -0.0 2,205,211 + -0.2 2,205,942 + ABID97_RS10605 0.50 -0.1 2,205,942 + ABID97_RS10605 0.50 -0.2 2,206,072 - ABID97_RS10605 0.60 +0.1
Or see this region's nucleotide sequence