Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03010

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03000 and ABID97_RS03005 are separated by 54 nucleotidesABID97_RS03005 and ABID97_RS03010 are separated by 106 nucleotidesABID97_RS03010 and ABID97_RS03015 are separated by 87 nucleotidesABID97_RS03015 and ABID97_RS03020 are separated by 83 nucleotides ABID97_RS03000: ABID97_RS03000 - septum site-determining protein MinD, at 607,909 to 608,724 _RS03000 ABID97_RS03005: ABID97_RS03005 - septum site-determining protein MinC, at 608,779 to 609,552 _RS03005 ABID97_RS03010: ABID97_RS03010 - solute carrier family 23 protein, at 609,659 to 610,960 _RS03010 ABID97_RS03015: ABID97_RS03015 - hotdog fold thioesterase, at 611,048 to 611,470 _RS03015 ABID97_RS03020: ABID97_RS03020 - hypothetical protein, at 611,554 to 612,885 _RS03020 Position (kb) 609 610 611Strain fitness (log2 ratio) -1 0 1 2at 608.818 kb on + strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.979 kb on - strand, within ABID97_RS03005at 609.059 kb on + strand, within ABID97_RS03005at 609.475 kb on + strandat 609.645 kb on + strandat 609.645 kb on + strandat 609.645 kb on + strandat 609.706 kb on - strandat 609.902 kb on + strand, within ABID97_RS03010at 609.902 kb on + strand, within ABID97_RS03010at 609.902 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.012 kb on - strand, within ABID97_RS03010at 610.012 kb on - strand, within ABID97_RS03010at 610.012 kb on - strand, within ABID97_RS03010at 610.050 kb on + strand, within ABID97_RS03010at 610.050 kb on + strand, within ABID97_RS03010at 610.050 kb on + strand, within ABID97_RS03010at 610.051 kb on - strand, within ABID97_RS03010at 610.051 kb on - strand, within ABID97_RS03010at 610.051 kb on - strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.129 kb on - strand, within ABID97_RS03010at 610.129 kb on - strand, within ABID97_RS03010at 610.341 kb on + strand, within ABID97_RS03010at 610.342 kb on - strand, within ABID97_RS03010at 610.342 kb on - strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.602 kb on + strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.603 kb on - strand, within ABID97_RS03010at 610.671 kb on + strand, within ABID97_RS03010at 610.722 kb on + strand, within ABID97_RS03010at 610.722 kb on + strand, within ABID97_RS03010at 610.722 kb on + strand, within ABID97_RS03010at 610.723 kb on - strand, within ABID97_RS03010at 610.723 kb on - strand, within ABID97_RS03010at 610.949 kb on + strandat 610.949 kb on + strandat 610.950 kb on - strandat 610.950 kb on - strandat 610.950 kb on - strandat 610.970 kb on - strandat 611.226 kb on - strand, within ABID97_RS03015at 611.501 kb on + strandat 611.501 kb on + strandat 611.502 kb on - strandat 611.502 kb on - strandat 611.542 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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608,818 + +1.0
608,819 - +1.3
608,819 - +1.3
608,819 - -0.4
608,819 - +0.0
608,873 + ABID97_RS03005 0.12 -0.2
608,873 + ABID97_RS03005 0.12 -0.1
608,873 + ABID97_RS03005 0.12 -0.1
608,873 + ABID97_RS03005 0.12 +0.2
608,873 + ABID97_RS03005 0.12 -0.1
608,874 - ABID97_RS03005 0.12 -0.5
608,874 - ABID97_RS03005 0.12 +0.2
608,874 - ABID97_RS03005 0.12 +0.8
608,874 - ABID97_RS03005 0.12 -0.4
608,978 + ABID97_RS03005 0.26 +0.2
608,978 + ABID97_RS03005 0.26 +0.9
608,978 + ABID97_RS03005 0.26 -1.0
608,979 - ABID97_RS03005 0.26 +0.9
609,059 + ABID97_RS03005 0.36 -0.4
609,475 + -0.0
609,645 + -0.0
609,645 + -0.5
609,645 + -0.4
609,706 - -1.2
609,902 + ABID97_RS03010 0.19 -0.3
609,902 + ABID97_RS03010 0.19 -0.4
609,902 + ABID97_RS03010 0.19 -0.2
610,011 + ABID97_RS03010 0.27 -0.4
610,011 + ABID97_RS03010 0.27 +0.6
610,011 + ABID97_RS03010 0.27 +0.2
610,011 + ABID97_RS03010 0.27 -0.9
610,011 + ABID97_RS03010 0.27 +0.2
610,011 + ABID97_RS03010 0.27 -0.5
610,012 - ABID97_RS03010 0.27 +0.0
610,012 - ABID97_RS03010 0.27 -0.3
610,012 - ABID97_RS03010 0.27 -0.2
610,050 + ABID97_RS03010 0.30 +1.8
610,050 + ABID97_RS03010 0.30 -1.4
610,050 + ABID97_RS03010 0.30 -1.1
610,051 - ABID97_RS03010 0.30 -0.3
610,051 - ABID97_RS03010 0.30 -0.6
610,051 - ABID97_RS03010 0.30 -0.1
610,128 + ABID97_RS03010 0.36 -0.7
610,128 + ABID97_RS03010 0.36 -1.0
610,128 + ABID97_RS03010 0.36 -1.5
610,128 + ABID97_RS03010 0.36 -0.6
610,129 - ABID97_RS03010 0.36 -0.2
610,129 - ABID97_RS03010 0.36 +0.0
610,341 + ABID97_RS03010 0.52 +1.3
610,342 - ABID97_RS03010 0.52 -0.6
610,342 - ABID97_RS03010 0.52 +0.4
610,602 + ABID97_RS03010 0.72 +0.2
610,602 + ABID97_RS03010 0.72 -0.8
610,602 + ABID97_RS03010 0.72 -0.3
610,602 + ABID97_RS03010 0.72 -0.6
610,602 + ABID97_RS03010 0.72 -0.6
610,602 + ABID97_RS03010 0.72 +0.4
610,602 + ABID97_RS03010 0.72 +1.0
610,602 + ABID97_RS03010 0.72 +1.3
610,603 - ABID97_RS03010 0.73 +0.1
610,603 - ABID97_RS03010 0.73 -0.0
610,603 - ABID97_RS03010 0.73 -0.2
610,603 - ABID97_RS03010 0.73 +0.1
610,603 - ABID97_RS03010 0.73 +0.2
610,603 - ABID97_RS03010 0.73 -0.5
610,603 - ABID97_RS03010 0.73 +0.8
610,603 - ABID97_RS03010 0.73 +0.5
610,603 - ABID97_RS03010 0.73 -0.3
610,671 + ABID97_RS03010 0.78 -0.2
610,722 + ABID97_RS03010 0.82 -0.8
610,722 + ABID97_RS03010 0.82 -0.2
610,722 + ABID97_RS03010 0.82 -0.2
610,723 - ABID97_RS03010 0.82 +0.3
610,723 - ABID97_RS03010 0.82 -0.3
610,949 + +0.1
610,949 + -0.2
610,950 - +0.0
610,950 - -0.4
610,950 - -0.3
610,970 - -0.1
611,226 - ABID97_RS03015 0.42 -0.3
611,501 + -0.2
611,501 + -0.2
611,502 - -0.3
611,502 - +0.1
611,542 + +0.2

Or see this region's nucleotide sequence