Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01205

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01200 and ABID97_RS01205 are separated by 6 nucleotidesABID97_RS01205 and ABID97_RS01210 are separated by 110 nucleotides ABID97_RS01200: ABID97_RS01200 - L-idonate 5-dehydrogenase, at 246,117 to 247,190 _RS01200 ABID97_RS01205: ABID97_RS01205 - LacI family DNA-binding transcriptional regulator, at 247,197 to 248,207 _RS01205 ABID97_RS01210: ABID97_RS01210 - LysR family transcriptional regulator, at 248,318 to 249,202 _RS01210 Position (kb) 247 248 249Strain fitness (log2 ratio) -1 0 1at 246.255 kb on + strand, within ABID97_RS01200at 246.256 kb on - strand, within ABID97_RS01200at 247.610 kb on - strand, within ABID97_RS01205at 248.071 kb on + strand, within ABID97_RS01205

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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246,255 + ABID97_RS01200 0.13 +0.1
246,256 - ABID97_RS01200 0.13 +0.8
247,610 - ABID97_RS01205 0.41 +1.0
248,071 + ABID97_RS01205 0.86 +0.2

Or see this region's nucleotide sequence