Strain Fitness in Serratia liquefaciens MT49 around IAI46_25180

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25175 and IAI46_25180 are separated by 92 nucleotidesIAI46_25180 and IAI46_25185 are separated by 1 nucleotidesIAI46_25185 and IAI46_25190 are separated by 48 nucleotides IAI46_25175: IAI46_25175 - phosphate ABC transporter substrate-binding protein PstS, at 5,376,405 to 5,377,445 _25175 IAI46_25180: IAI46_25180 - phosphate ABC transporter permease PstC, at 5,377,538 to 5,378,494 _25180 IAI46_25185: IAI46_25185 - phosphate ABC transporter permease PstA, at 5,378,496 to 5,379,386 _25185 IAI46_25190: IAI46_25190 - phosphate ABC transporter ATP-binding protein PstB, at 5,379,435 to 5,380,211 _25190 Position (kb) 5377 5378 5379Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5376.572 kb on + strand, within IAI46_25175at 5376.572 kb on + strand, within IAI46_25175at 5376.573 kb on - strand, within IAI46_25175at 5376.573 kb on - strand, within IAI46_25175at 5376.573 kb on - strand, within IAI46_25175at 5376.576 kb on + strand, within IAI46_25175at 5376.576 kb on + strand, within IAI46_25175at 5376.577 kb on - strand, within IAI46_25175at 5376.577 kb on - strand, within IAI46_25175at 5376.577 kb on - strand, within IAI46_25175at 5376.785 kb on + strand, within IAI46_25175at 5376.785 kb on + strand, within IAI46_25175at 5376.785 kb on + strand, within IAI46_25175at 5376.785 kb on + strand, within IAI46_25175at 5376.786 kb on - strand, within IAI46_25175at 5376.786 kb on - strand, within IAI46_25175at 5376.786 kb on - strand, within IAI46_25175at 5376.789 kb on + strand, within IAI46_25175at 5376.790 kb on - strand, within IAI46_25175at 5376.790 kb on - strand, within IAI46_25175at 5376.921 kb on + strand, within IAI46_25175at 5376.922 kb on - strand, within IAI46_25175at 5376.922 kb on - strand, within IAI46_25175at 5376.922 kb on - strand, within IAI46_25175at 5376.922 kb on - strand, within IAI46_25175at 5376.971 kb on + strand, within IAI46_25175at 5376.972 kb on - strand, within IAI46_25175at 5377.030 kb on + strand, within IAI46_25175at 5377.031 kb on - strand, within IAI46_25175at 5377.031 kb on - strand, within IAI46_25175at 5377.057 kb on - strand, within IAI46_25175at 5377.065 kb on + strand, within IAI46_25175at 5377.066 kb on - strand, within IAI46_25175at 5377.066 kb on - strand, within IAI46_25175at 5377.071 kb on + strand, within IAI46_25175at 5377.095 kb on + strand, within IAI46_25175at 5377.095 kb on + strand, within IAI46_25175at 5377.096 kb on - strand, within IAI46_25175at 5377.205 kb on + strand, within IAI46_25175at 5377.320 kb on + strand, within IAI46_25175at 5377.320 kb on + strand, within IAI46_25175at 5377.414 kb on + strandat 5377.441 kb on - strandat 5377.443 kb on + strandat 5377.444 kb on - strandat 5377.537 kb on + strandat 5377.537 kb on + strandat 5377.538 kb on - strandat 5377.538 kb on - strandat 5377.624 kb on + strandat 5377.629 kb on + strandat 5377.629 kb on + strandat 5377.630 kb on - strandat 5377.649 kb on - strand, within IAI46_25180at 5377.649 kb on - strand, within IAI46_25180at 5377.649 kb on - strand, within IAI46_25180at 5377.684 kb on - strand, within IAI46_25180at 5377.763 kb on + strand, within IAI46_25180at 5377.763 kb on + strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.769 kb on - strand, within IAI46_25180at 5377.806 kb on + strand, within IAI46_25180at 5377.961 kb on + strand, within IAI46_25180at 5378.075 kb on - strand, within IAI46_25180at 5378.075 kb on - strand, within IAI46_25180at 5378.080 kb on + strand, within IAI46_25180at 5378.081 kb on - strand, within IAI46_25180at 5378.087 kb on + strand, within IAI46_25180at 5378.088 kb on - strand, within IAI46_25180at 5378.089 kb on + strand, within IAI46_25180at 5378.150 kb on + strand, within IAI46_25180at 5378.193 kb on + strand, within IAI46_25180at 5378.193 kb on + strand, within IAI46_25180at 5378.193 kb on + strand, within IAI46_25180at 5378.194 kb on - strand, within IAI46_25180at 5378.204 kb on - strand, within IAI46_25180at 5378.229 kb on + strand, within IAI46_25180at 5378.229 kb on + strand, within IAI46_25180at 5378.229 kb on + strand, within IAI46_25180at 5378.230 kb on - strand, within IAI46_25180at 5378.294 kb on + strand, within IAI46_25180at 5378.294 kb on + strand, within IAI46_25180at 5378.295 kb on - strand, within IAI46_25180at 5378.295 kb on - strand, within IAI46_25180at 5378.295 kb on - strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.319 kb on - strand, within IAI46_25180at 5378.319 kb on - strand, within IAI46_25180at 5378.425 kb on + strandat 5378.434 kb on + strandat 5378.504 kb on + strandat 5378.504 kb on + strandat 5378.504 kb on + strandat 5378.505 kb on - strandat 5378.519 kb on + strandat 5378.520 kb on - strandat 5378.524 kb on + strandat 5378.525 kb on - strandat 5378.714 kb on + strand, within IAI46_25185at 5378.815 kb on - strand, within IAI46_25185at 5378.815 kb on - strand, within IAI46_25185at 5378.815 kb on - strand, within IAI46_25185at 5378.834 kb on + strand, within IAI46_25185at 5378.864 kb on + strand, within IAI46_25185at 5378.917 kb on - strand, within IAI46_25185at 5379.006 kb on - strand, within IAI46_25185at 5379.017 kb on + strand, within IAI46_25185at 5379.017 kb on + strand, within IAI46_25185at 5379.017 kb on + strand, within IAI46_25185at 5379.018 kb on - strand, within IAI46_25185at 5379.018 kb on - strand, within IAI46_25185at 5379.058 kb on - strand, within IAI46_25185at 5379.185 kb on + strand, within IAI46_25185at 5379.186 kb on - strand, within IAI46_25185at 5379.319 kb on + strandat 5379.320 kb on - strandat 5379.337 kb on + strandat 5379.338 kb on - strandat 5379.338 kb on - strandat 5379.344 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.441 kb on - strandat 5379.492 kb on + strandat 5379.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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5,376,572 + IAI46_25175 0.16 +1.1
5,376,572 + IAI46_25175 0.16 +0.0
5,376,573 - IAI46_25175 0.16 +1.5
5,376,573 - IAI46_25175 0.16 -1.0
5,376,573 - IAI46_25175 0.16 -0.0
5,376,576 + IAI46_25175 0.16 -0.8
5,376,576 + IAI46_25175 0.16 -0.1
5,376,577 - IAI46_25175 0.17 -1.1
5,376,577 - IAI46_25175 0.17 -0.4
5,376,577 - IAI46_25175 0.17 -0.9
5,376,785 + IAI46_25175 0.37 +0.4
5,376,785 + IAI46_25175 0.37 -1.4
5,376,785 + IAI46_25175 0.37 -0.3
5,376,785 + IAI46_25175 0.37 -0.4
5,376,786 - IAI46_25175 0.37 +0.9
5,376,786 - IAI46_25175 0.37 +0.8
5,376,786 - IAI46_25175 0.37 -0.6
5,376,789 + IAI46_25175 0.37 +0.1
5,376,790 - IAI46_25175 0.37 +0.7
5,376,790 - IAI46_25175 0.37 +0.4
5,376,921 + IAI46_25175 0.50 -0.6
5,376,922 - IAI46_25175 0.50 +1.2
5,376,922 - IAI46_25175 0.50 -0.2
5,376,922 - IAI46_25175 0.50 -0.7
5,376,922 - IAI46_25175 0.50 +0.0
5,376,971 + IAI46_25175 0.54 -1.2
5,376,972 - IAI46_25175 0.54 +0.2
5,377,030 + IAI46_25175 0.60 +0.0
5,377,031 - IAI46_25175 0.60 -0.6
5,377,031 - IAI46_25175 0.60 +0.6
5,377,057 - IAI46_25175 0.63 +1.4
5,377,065 + IAI46_25175 0.63 -0.3
5,377,066 - IAI46_25175 0.63 -1.0
5,377,066 - IAI46_25175 0.63 -0.3
5,377,071 + IAI46_25175 0.64 -2.2
5,377,095 + IAI46_25175 0.66 -0.0
5,377,095 + IAI46_25175 0.66 -0.7
5,377,096 - IAI46_25175 0.66 +0.3
5,377,205 + IAI46_25175 0.77 +0.9
5,377,320 + IAI46_25175 0.88 +0.2
5,377,320 + IAI46_25175 0.88 +0.6
5,377,414 + +0.3
5,377,441 - +0.5
5,377,443 + -0.1
5,377,444 - -0.7
5,377,537 + +0.5
5,377,537 + -0.2
5,377,538 - -1.0
5,377,538 - +0.9
5,377,624 + -0.1
5,377,629 + +0.2
5,377,629 + +0.3
5,377,630 - -1.1
5,377,649 - IAI46_25180 0.12 +0.4
5,377,649 - IAI46_25180 0.12 +2.1
5,377,649 - IAI46_25180 0.12 +0.8
5,377,684 - IAI46_25180 0.15 +0.1
5,377,763 + IAI46_25180 0.24 +0.8
5,377,763 + IAI46_25180 0.24 -0.4
5,377,764 - IAI46_25180 0.24 -0.4
5,377,764 - IAI46_25180 0.24 -0.4
5,377,764 - IAI46_25180 0.24 +0.8
5,377,764 - IAI46_25180 0.24 +0.2
5,377,769 - IAI46_25180 0.24 +0.3
5,377,806 + IAI46_25180 0.28 +1.1
5,377,961 + IAI46_25180 0.44 +0.1
5,378,075 - IAI46_25180 0.56 -1.0
5,378,075 - IAI46_25180 0.56 -0.1
5,378,080 + IAI46_25180 0.57 -0.1
5,378,081 - IAI46_25180 0.57 -0.6
5,378,087 + IAI46_25180 0.57 -1.0
5,378,088 - IAI46_25180 0.57 -0.6
5,378,089 + IAI46_25180 0.58 +0.9
5,378,150 + IAI46_25180 0.64 +0.0
5,378,193 + IAI46_25180 0.68 +0.3
5,378,193 + IAI46_25180 0.68 +0.9
5,378,193 + IAI46_25180 0.68 +0.3
5,378,194 - IAI46_25180 0.69 +0.2
5,378,204 - IAI46_25180 0.70 -0.3
5,378,229 + IAI46_25180 0.72 +0.6
5,378,229 + IAI46_25180 0.72 +1.3
5,378,229 + IAI46_25180 0.72 -0.5
5,378,230 - IAI46_25180 0.72 -0.3
5,378,294 + IAI46_25180 0.79 +0.2
5,378,294 + IAI46_25180 0.79 +1.7
5,378,295 - IAI46_25180 0.79 -0.7
5,378,295 - IAI46_25180 0.79 +0.2
5,378,295 - IAI46_25180 0.79 +0.9
5,378,318 + IAI46_25180 0.82 +0.5
5,378,318 + IAI46_25180 0.82 +0.1
5,378,318 + IAI46_25180 0.82 +0.9
5,378,318 + IAI46_25180 0.82 +0.8
5,378,318 + IAI46_25180 0.82 +0.1
5,378,318 + IAI46_25180 0.82 -1.2
5,378,318 + IAI46_25180 0.82 +0.8
5,378,318 + IAI46_25180 0.82 +0.2
5,378,319 - IAI46_25180 0.82 -0.1
5,378,319 - IAI46_25180 0.82 +0.0
5,378,425 + -1.3
5,378,434 + -0.4
5,378,504 + +0.3
5,378,504 + +0.6
5,378,504 + -0.0
5,378,505 - -0.5
5,378,519 + -1.6
5,378,520 - -0.8
5,378,524 + -0.5
5,378,525 - -0.0
5,378,714 + IAI46_25185 0.24 +0.4
5,378,815 - IAI46_25185 0.36 -0.6
5,378,815 - IAI46_25185 0.36 +0.5
5,378,815 - IAI46_25185 0.36 +0.0
5,378,834 + IAI46_25185 0.38 +2.9
5,378,864 + IAI46_25185 0.41 -0.7
5,378,917 - IAI46_25185 0.47 +0.9
5,379,006 - IAI46_25185 0.57 -1.6
5,379,017 + IAI46_25185 0.58 -0.1
5,379,017 + IAI46_25185 0.58 -0.1
5,379,017 + IAI46_25185 0.58 -1.3
5,379,018 - IAI46_25185 0.59 -0.2
5,379,018 - IAI46_25185 0.59 -0.3
5,379,058 - IAI46_25185 0.63 -0.4
5,379,185 + IAI46_25185 0.77 -0.1
5,379,186 - IAI46_25185 0.77 +0.3
5,379,319 + +0.1
5,379,320 - +0.6
5,379,337 + -0.3
5,379,338 - -2.0
5,379,338 - +0.1
5,379,344 + +1.6
5,379,440 + -0.2
5,379,440 + -0.6
5,379,440 + -0.6
5,379,440 + +0.1
5,379,440 + +0.2
5,379,441 - +2.5
5,379,492 + -0.4
5,379,493 - +0.4

Or see this region's nucleotide sequence