Strain Fitness in Serratia liquefaciens MT49 around IAI46_24850

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24840 and IAI46_24845 are separated by 47 nucleotidesIAI46_24845 and IAI46_24850 are separated by 93 nucleotidesIAI46_24850 and IAI46_24855 are separated by 126 nucleotides IAI46_24840: IAI46_24840 - nucleoid occlusion factor SlmA, at 5,299,693 to 5,300,289 _24840 IAI46_24845: IAI46_24845 - orotate phosphoribosyltransferase, at 5,300,337 to 5,300,978 _24845 IAI46_24850: IAI46_24850 - ribonuclease PH, at 5,301,072 to 5,301,788 _24850 IAI46_24855: IAI46_24855 - YicC family protein, at 5,301,915 to 5,302,778 _24855 Position (kb) 5301 5302Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5300.145 kb on + strand, within IAI46_24840at 5300.210 kb on - strand, within IAI46_24840at 5300.210 kb on - strand, within IAI46_24840at 5300.287 kb on + strandat 5300.287 kb on + strandat 5300.310 kb on + strandat 5300.311 kb on - strandat 5300.311 kb on - strandat 5300.311 kb on - strandat 5300.326 kb on + strandat 5300.326 kb on + strandat 5300.326 kb on + strandat 5300.326 kb on + strandat 5300.327 kb on - strandat 5300.327 kb on - strandat 5300.327 kb on - strandat 5300.330 kb on + strandat 5300.331 kb on - strandat 5300.331 kb on - strandat 5300.331 kb on - strandat 5300.348 kb on - strandat 5300.410 kb on + strand, within IAI46_24845at 5300.411 kb on - strand, within IAI46_24845at 5300.422 kb on + strand, within IAI46_24845at 5300.458 kb on + strand, within IAI46_24845at 5300.459 kb on - strand, within IAI46_24845at 5300.459 kb on - strand, within IAI46_24845at 5300.695 kb on + strand, within IAI46_24845at 5300.696 kb on - strand, within IAI46_24845at 5300.696 kb on - strand, within IAI46_24845at 5300.756 kb on + strand, within IAI46_24845at 5300.764 kb on + strand, within IAI46_24845at 5300.764 kb on + strand, within IAI46_24845at 5300.764 kb on + strand, within IAI46_24845at 5300.764 kb on + strand, within IAI46_24845at 5300.765 kb on - strand, within IAI46_24845at 5300.765 kb on - strand, within IAI46_24845at 5300.821 kb on + strand, within IAI46_24845at 5300.821 kb on + strand, within IAI46_24845at 5300.822 kb on - strand, within IAI46_24845at 5300.835 kb on + strand, within IAI46_24845at 5300.835 kb on + strand, within IAI46_24845at 5300.836 kb on - strand, within IAI46_24845at 5300.858 kb on + strand, within IAI46_24845at 5300.858 kb on + strand, within IAI46_24845at 5300.859 kb on - strand, within IAI46_24845at 5300.859 kb on - strand, within IAI46_24845at 5300.881 kb on + strand, within IAI46_24845at 5300.881 kb on + strand, within IAI46_24845at 5300.882 kb on - strand, within IAI46_24845at 5300.979 kb on + strandat 5300.980 kb on - strandat 5301.005 kb on - strandat 5301.013 kb on + strandat 5301.013 kb on + strandat 5301.014 kb on - strandat 5301.016 kb on + strandat 5301.073 kb on + strandat 5301.110 kb on + strandat 5301.111 kb on - strandat 5301.260 kb on - strand, within IAI46_24850at 5301.260 kb on - strand, within IAI46_24850at 5301.435 kb on + strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.436 kb on - strand, within IAI46_24850at 5301.660 kb on + strand, within IAI46_24850at 5301.660 kb on + strand, within IAI46_24850at 5301.729 kb on - strandat 5301.730 kb on + strandat 5301.730 kb on + strandat 5301.731 kb on - strandat 5301.731 kb on - strandat 5301.731 kb on - strandat 5301.731 kb on - strandat 5301.807 kb on + strandat 5301.808 kb on - strandat 5301.828 kb on + strandat 5301.831 kb on - strandat 5301.846 kb on + strandat 5301.846 kb on + strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.847 kb on - strandat 5301.876 kb on + strandat 5301.876 kb on + strandat 5301.877 kb on - strandat 5301.878 kb on + strandat 5301.897 kb on + strandat 5301.898 kb on - strandat 5301.901 kb on - strandat 5301.936 kb on + strandat 5301.936 kb on + strandat 5301.936 kb on + strandat 5302.005 kb on + strand, within IAI46_24855at 5302.006 kb on - strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.017 kb on + strand, within IAI46_24855at 5302.018 kb on - strand, within IAI46_24855at 5302.018 kb on - strand, within IAI46_24855at 5302.018 kb on - strand, within IAI46_24855at 5302.233 kb on - strand, within IAI46_24855at 5302.414 kb on + strand, within IAI46_24855at 5302.415 kb on - strand, within IAI46_24855at 5302.547 kb on + strand, within IAI46_24855at 5302.547 kb on + strand, within IAI46_24855at 5302.547 kb on + strand, within IAI46_24855at 5302.548 kb on - strand, within IAI46_24855at 5302.548 kb on - strand, within IAI46_24855at 5302.588 kb on + strand, within IAI46_24855at 5302.589 kb on - strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.646 kb on + strand, within IAI46_24855at 5302.647 kb on - strand, within IAI46_24855at 5302.647 kb on - strand, within IAI46_24855at 5302.776 kb on + strandat 5302.779 kb on + strandat 5302.779 kb on + strandat 5302.779 kb on + strandat 5302.780 kb on - strandat 5302.780 kb on - strandat 5302.780 kb on - strandat 5302.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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5,300,145 + IAI46_24840 0.76 +0.6
5,300,210 - IAI46_24840 0.87 -0.7
5,300,210 - IAI46_24840 0.87 -0.3
5,300,287 + -1.6
5,300,287 + +0.9
5,300,310 + -0.6
5,300,311 - -0.6
5,300,311 - -0.5
5,300,311 - -0.7
5,300,326 + -0.1
5,300,326 + +0.1
5,300,326 + +0.7
5,300,326 + -0.5
5,300,327 - +0.4
5,300,327 - +0.2
5,300,327 - -1.1
5,300,330 + -0.1
5,300,331 - +0.8
5,300,331 - +1.3
5,300,331 - +0.3
5,300,348 - -0.7
5,300,410 + IAI46_24845 0.11 -1.7
5,300,411 - IAI46_24845 0.12 -1.0
5,300,422 + IAI46_24845 0.13 -1.5
5,300,458 + IAI46_24845 0.19 -2.0
5,300,459 - IAI46_24845 0.19 -1.1
5,300,459 - IAI46_24845 0.19 -2.0
5,300,695 + IAI46_24845 0.56 -1.2
5,300,696 - IAI46_24845 0.56 -1.3
5,300,696 - IAI46_24845 0.56 -0.9
5,300,756 + IAI46_24845 0.65 -0.9
5,300,764 + IAI46_24845 0.67 -1.8
5,300,764 + IAI46_24845 0.67 -1.2
5,300,764 + IAI46_24845 0.67 -0.9
5,300,764 + IAI46_24845 0.67 -2.0
5,300,765 - IAI46_24845 0.67 -2.7
5,300,765 - IAI46_24845 0.67 -1.4
5,300,821 + IAI46_24845 0.75 -1.9
5,300,821 + IAI46_24845 0.75 -3.6
5,300,822 - IAI46_24845 0.76 -0.2
5,300,835 + IAI46_24845 0.78 -2.1
5,300,835 + IAI46_24845 0.78 -1.9
5,300,836 - IAI46_24845 0.78 -1.0
5,300,858 + IAI46_24845 0.81 -3.2
5,300,858 + IAI46_24845 0.81 -0.6
5,300,859 - IAI46_24845 0.81 -2.4
5,300,859 - IAI46_24845 0.81 -1.3
5,300,881 + IAI46_24845 0.85 -0.1
5,300,881 + IAI46_24845 0.85 -1.7
5,300,882 - IAI46_24845 0.85 -1.2
5,300,979 + -0.6
5,300,980 - -1.0
5,301,005 - +0.4
5,301,013 + -1.5
5,301,013 + -0.5
5,301,014 - -0.2
5,301,016 + -0.4
5,301,073 + -0.3
5,301,110 + -0.6
5,301,111 - +0.3
5,301,260 - IAI46_24850 0.26 +0.1
5,301,260 - IAI46_24850 0.26 -2.3
5,301,435 + IAI46_24850 0.51 +0.4
5,301,436 - IAI46_24850 0.51 -0.9
5,301,436 - IAI46_24850 0.51 +1.4
5,301,436 - IAI46_24850 0.51 -0.3
5,301,436 - IAI46_24850 0.51 -0.3
5,301,660 + IAI46_24850 0.82 -0.6
5,301,660 + IAI46_24850 0.82 -1.5
5,301,729 - +0.5
5,301,730 + -0.4
5,301,730 + +0.4
5,301,731 - -0.3
5,301,731 - -0.2
5,301,731 - +0.9
5,301,731 - +0.4
5,301,807 + -0.2
5,301,808 - -0.8
5,301,828 + -0.5
5,301,831 - +0.6
5,301,846 + -1.2
5,301,846 + +0.0
5,301,847 - +0.5
5,301,847 - +0.2
5,301,847 - +0.5
5,301,847 - +0.3
5,301,847 - +0.6
5,301,847 - +0.2
5,301,847 - -0.0
5,301,876 + +1.9
5,301,876 + -0.1
5,301,877 - +1.9
5,301,878 + +0.4
5,301,897 + -0.2
5,301,898 - -0.5
5,301,901 - -0.3
5,301,936 + +0.8
5,301,936 + -1.9
5,301,936 + +0.8
5,302,005 + IAI46_24855 0.10 +0.4
5,302,006 - IAI46_24855 0.11 +0.4
5,302,017 + IAI46_24855 0.12 +0.6
5,302,017 + IAI46_24855 0.12 -1.0
5,302,017 + IAI46_24855 0.12 -0.0
5,302,017 + IAI46_24855 0.12 -0.5
5,302,018 - IAI46_24855 0.12 -1.2
5,302,018 - IAI46_24855 0.12 +0.3
5,302,018 - IAI46_24855 0.12 +0.7
5,302,233 - IAI46_24855 0.37 +0.7
5,302,414 + IAI46_24855 0.58 -0.6
5,302,415 - IAI46_24855 0.58 +0.3
5,302,547 + IAI46_24855 0.73 +0.4
5,302,547 + IAI46_24855 0.73 +0.1
5,302,547 + IAI46_24855 0.73 +0.0
5,302,548 - IAI46_24855 0.73 +0.4
5,302,548 - IAI46_24855 0.73 +0.2
5,302,588 + IAI46_24855 0.78 -1.4
5,302,589 - IAI46_24855 0.78 -0.0
5,302,646 + IAI46_24855 0.85 +0.1
5,302,646 + IAI46_24855 0.85 -0.2
5,302,646 + IAI46_24855 0.85 -0.6
5,302,646 + IAI46_24855 0.85 +0.4
5,302,647 - IAI46_24855 0.85 -0.5
5,302,647 - IAI46_24855 0.85 -2.7
5,302,776 + -0.3
5,302,779 + +0.3
5,302,779 + +0.1
5,302,779 + +0.9
5,302,780 - -0.2
5,302,780 - -1.1
5,302,780 - +1.5
5,302,780 - +0.1

Or see this region's nucleotide sequence