Strain Fitness in Serratia liquefaciens MT49 around IAI46_23880

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_23870 and IAI46_23875 are separated by 13 nucleotidesIAI46_23875 and IAI46_23880 are separated by 10 nucleotidesIAI46_23880 and IAI46_23885 are separated by 12 nucleotides IAI46_23870: IAI46_23870 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 5,079,000 to 5,079,656 _23870 IAI46_23875: IAI46_23875 - PTS ascorbate transporter subunit IIA, at 5,079,670 to 5,080,143 _23875 IAI46_23880: IAI46_23880 - PTS ascorbate transporter subunit IIB, at 5,080,154 to 5,080,462 _23880 IAI46_23885: IAI46_23885 - PTS ascorbate transporter subunit IIC, at 5,080,475 to 5,081,872 _23885 Position (kb) 5080 5081Strain fitness (log2 ratio) -1 0 1 2at 5079.247 kb on + strand, within IAI46_23870at 5079.371 kb on + strand, within IAI46_23870at 5079.372 kb on - strand, within IAI46_23870at 5079.461 kb on + strand, within IAI46_23870at 5079.474 kb on + strand, within IAI46_23870at 5079.475 kb on - strand, within IAI46_23870at 5079.491 kb on - strand, within IAI46_23870at 5079.491 kb on - strand, within IAI46_23870at 5079.590 kb on + strand, within IAI46_23870at 5079.590 kb on + strand, within IAI46_23870at 5079.591 kb on - strandat 5079.591 kb on - strandat 5079.591 kb on - strandat 5079.591 kb on - strandat 5079.591 kb on - strandat 5079.595 kb on + strandat 5079.595 kb on + strandat 5079.595 kb on + strandat 5079.595 kb on + strandat 5079.595 kb on + strandat 5079.596 kb on - strandat 5079.596 kb on - strandat 5079.596 kb on - strandat 5079.596 kb on - strandat 5079.638 kb on + strandat 5079.638 kb on + strandat 5079.638 kb on + strandat 5079.642 kb on + strandat 5079.642 kb on + strandat 5079.642 kb on + strandat 5079.642 kb on + strandat 5079.643 kb on - strandat 5079.643 kb on - strandat 5079.643 kb on - strandat 5079.643 kb on - strandat 5079.706 kb on + strandat 5079.778 kb on + strand, within IAI46_23875at 5079.779 kb on - strand, within IAI46_23875at 5079.779 kb on - strand, within IAI46_23875at 5079.810 kb on + strand, within IAI46_23875at 5079.843 kb on + strand, within IAI46_23875at 5079.843 kb on + strand, within IAI46_23875at 5079.919 kb on + strand, within IAI46_23875at 5080.016 kb on + strand, within IAI46_23875at 5080.231 kb on + strand, within IAI46_23880at 5080.231 kb on + strand, within IAI46_23880at 5080.232 kb on - strand, within IAI46_23880at 5080.232 kb on - strand, within IAI46_23880at 5080.251 kb on + strand, within IAI46_23880at 5080.251 kb on + strand, within IAI46_23880at 5080.251 kb on + strand, within IAI46_23880at 5080.251 kb on + strand, within IAI46_23880at 5080.251 kb on + strand, within IAI46_23880at 5080.251 kb on + strand, within IAI46_23880at 5080.251 kb on + strand, within IAI46_23880at 5080.252 kb on - strand, within IAI46_23880at 5080.252 kb on - strand, within IAI46_23880at 5080.252 kb on - strand, within IAI46_23880at 5080.332 kb on + strand, within IAI46_23880at 5080.361 kb on - strand, within IAI46_23880at 5080.361 kb on - strand, within IAI46_23880at 5080.361 kb on - strand, within IAI46_23880at 5080.361 kb on - strand, within IAI46_23880at 5080.476 kb on + strandat 5080.551 kb on + strandat 5080.551 kb on + strandat 5080.552 kb on - strandat 5080.583 kb on - strandat 5080.583 kb on - strandat 5080.844 kb on + strand, within IAI46_23885at 5080.882 kb on + strand, within IAI46_23885at 5080.882 kb on + strand, within IAI46_23885at 5080.883 kb on - strand, within IAI46_23885at 5080.883 kb on - strand, within IAI46_23885at 5080.883 kb on - strand, within IAI46_23885at 5080.883 kb on - strand, within IAI46_23885at 5080.915 kb on + strand, within IAI46_23885at 5080.915 kb on + strand, within IAI46_23885at 5080.917 kb on + strand, within IAI46_23885at 5080.917 kb on + strand, within IAI46_23885at 5080.918 kb on - strand, within IAI46_23885at 5081.070 kb on + strand, within IAI46_23885at 5081.070 kb on + strand, within IAI46_23885at 5081.071 kb on - strand, within IAI46_23885at 5081.247 kb on + strand, within IAI46_23885at 5081.263 kb on - strand, within IAI46_23885at 5081.300 kb on - strand, within IAI46_23885at 5081.367 kb on + strand, within IAI46_23885at 5081.368 kb on - strand, within IAI46_23885at 5081.368 kb on - strand, within IAI46_23885at 5081.396 kb on + strand, within IAI46_23885at 5081.428 kb on - strand, within IAI46_23885at 5081.436 kb on - strand, within IAI46_23885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
5,079,247 + IAI46_23870 0.38 +0.5
5,079,371 + IAI46_23870 0.56 +0.3
5,079,372 - IAI46_23870 0.57 -0.4
5,079,461 + IAI46_23870 0.70 -0.8
5,079,474 + IAI46_23870 0.72 -0.5
5,079,475 - IAI46_23870 0.72 -1.0
5,079,491 - IAI46_23870 0.75 +0.2
5,079,491 - IAI46_23870 0.75 +0.3
5,079,590 + IAI46_23870 0.90 +0.7
5,079,590 + IAI46_23870 0.90 +0.2
5,079,591 - +1.0
5,079,591 - +0.6
5,079,591 - +0.2
5,079,591 - +0.6
5,079,591 - +0.3
5,079,595 + -0.2
5,079,595 + +0.0
5,079,595 + +0.4
5,079,595 + +0.3
5,079,595 + +0.5
5,079,596 - +0.4
5,079,596 - -0.6
5,079,596 - +0.6
5,079,596 - +0.0
5,079,638 + -0.2
5,079,638 + +0.8
5,079,638 + -0.6
5,079,642 + -0.3
5,079,642 + -0.8
5,079,642 + -0.3
5,079,642 + +0.4
5,079,643 - -0.3
5,079,643 - -0.1
5,079,643 - +1.6
5,079,643 - +0.6
5,079,706 + +0.1
5,079,778 + IAI46_23875 0.23 -0.8
5,079,779 - IAI46_23875 0.23 +0.4
5,079,779 - IAI46_23875 0.23 -0.3
5,079,810 + IAI46_23875 0.30 -0.7
5,079,843 + IAI46_23875 0.36 +0.3
5,079,843 + IAI46_23875 0.36 +0.1
5,079,919 + IAI46_23875 0.53 -1.2
5,080,016 + IAI46_23875 0.73 +0.0
5,080,231 + IAI46_23880 0.25 +0.1
5,080,231 + IAI46_23880 0.25 -0.4
5,080,232 - IAI46_23880 0.25 +0.5
5,080,232 - IAI46_23880 0.25 +0.0
5,080,251 + IAI46_23880 0.31 +0.6
5,080,251 + IAI46_23880 0.31 +0.1
5,080,251 + IAI46_23880 0.31 +0.0
5,080,251 + IAI46_23880 0.31 +0.3
5,080,251 + IAI46_23880 0.31 +2.0
5,080,251 + IAI46_23880 0.31 -0.0
5,080,251 + IAI46_23880 0.31 -0.4
5,080,252 - IAI46_23880 0.32 +1.2
5,080,252 - IAI46_23880 0.32 -0.0
5,080,252 - IAI46_23880 0.32 +0.7
5,080,332 + IAI46_23880 0.58 +0.2
5,080,361 - IAI46_23880 0.67 +0.3
5,080,361 - IAI46_23880 0.67 -0.2
5,080,361 - IAI46_23880 0.67 +0.1
5,080,361 - IAI46_23880 0.67 -0.3
5,080,476 + +0.9
5,080,551 + -0.5
5,080,551 + +0.1
5,080,552 - -0.7
5,080,583 - +0.0
5,080,583 - +0.2
5,080,844 + IAI46_23885 0.26 -0.4
5,080,882 + IAI46_23885 0.29 +0.9
5,080,882 + IAI46_23885 0.29 +0.9
5,080,883 - IAI46_23885 0.29 +0.5
5,080,883 - IAI46_23885 0.29 -0.3
5,080,883 - IAI46_23885 0.29 -0.3
5,080,883 - IAI46_23885 0.29 +0.4
5,080,915 + IAI46_23885 0.31 +1.0
5,080,915 + IAI46_23885 0.31 -0.0
5,080,917 + IAI46_23885 0.32 +0.7
5,080,917 + IAI46_23885 0.32 +0.3
5,080,918 - IAI46_23885 0.32 -1.0
5,081,070 + IAI46_23885 0.43 -1.5
5,081,070 + IAI46_23885 0.43 -1.0
5,081,071 - IAI46_23885 0.43 -0.2
5,081,247 + IAI46_23885 0.55 -0.6
5,081,263 - IAI46_23885 0.56 -0.4
5,081,300 - IAI46_23885 0.59 +0.2
5,081,367 + IAI46_23885 0.64 -0.1
5,081,368 - IAI46_23885 0.64 +0.6
5,081,368 - IAI46_23885 0.64 +0.1
5,081,396 + IAI46_23885 0.66 +1.2
5,081,428 - IAI46_23885 0.68 +0.1
5,081,436 - IAI46_23885 0.69 +0.8

Or see this region's nucleotide sequence