Strain Fitness in Serratia liquefaciens MT49 around IAI46_23655

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_23650 and IAI46_23655 are separated by 288 nucleotidesIAI46_23655 and IAI46_23660 overlap by 4 nucleotidesIAI46_23660 and IAI46_23665 are separated by 30 nucleotides IAI46_23650: IAI46_23650 - cytosine deaminase, at 5,029,428 to 5,030,711 _23650 IAI46_23655: IAI46_23655 - nitrite reductase large subunit, at 5,031,000 to 5,033,549 _23655 IAI46_23660: IAI46_23660 - nitrite reductase small subunit NirD, at 5,033,546 to 5,033,872 _23660 IAI46_23665: IAI46_23665 - nitrite transporter NirC, at 5,033,903 to 5,034,703 _23665 Position (kb) 5030 5031 5032 5033 5034Strain fitness (log2 ratio) -2 -1 0 1 2at 5030.089 kb on + strand, within IAI46_23650at 5030.090 kb on - strand, within IAI46_23650at 5030.267 kb on + strand, within IAI46_23650at 5030.310 kb on + strand, within IAI46_23650at 5030.310 kb on + strand, within IAI46_23650at 5030.356 kb on + strand, within IAI46_23650at 5030.357 kb on - strand, within IAI46_23650at 5030.357 kb on - strand, within IAI46_23650at 5030.615 kb on + strandat 5030.671 kb on - strandat 5030.687 kb on + strandat 5030.688 kb on - strandat 5030.749 kb on + strandat 5030.749 kb on + strandat 5030.749 kb on + strandat 5030.749 kb on + strandat 5030.750 kb on - strandat 5030.857 kb on + strandat 5030.898 kb on - strandat 5030.900 kb on - strandat 5030.913 kb on + strandat 5030.913 kb on + strandat 5030.913 kb on + strandat 5030.914 kb on - strandat 5030.915 kb on + strandat 5030.916 kb on - strandat 5030.916 kb on - strandat 5030.916 kb on - strandat 5030.964 kb on - strandat 5030.969 kb on - strandat 5030.974 kb on + strandat 5030.998 kb on + strandat 5031.103 kb on + strandat 5031.153 kb on + strandat 5031.154 kb on - strandat 5031.154 kb on - strandat 5031.221 kb on - strandat 5031.221 kb on - strandat 5031.300 kb on + strand, within IAI46_23655at 5031.301 kb on - strand, within IAI46_23655at 5031.303 kb on + strand, within IAI46_23655at 5031.303 kb on + strand, within IAI46_23655at 5031.304 kb on - strand, within IAI46_23655at 5031.449 kb on - strand, within IAI46_23655at 5031.517 kb on + strand, within IAI46_23655at 5031.517 kb on + strand, within IAI46_23655at 5031.518 kb on - strand, within IAI46_23655at 5031.518 kb on - strand, within IAI46_23655at 5031.518 kb on - strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.578 kb on - strand, within IAI46_23655at 5031.626 kb on + strand, within IAI46_23655at 5031.829 kb on - strand, within IAI46_23655at 5031.904 kb on + strand, within IAI46_23655at 5031.904 kb on + strand, within IAI46_23655at 5031.905 kb on - strand, within IAI46_23655at 5031.982 kb on + strand, within IAI46_23655at 5032.035 kb on + strand, within IAI46_23655at 5032.035 kb on + strand, within IAI46_23655at 5032.041 kb on + strand, within IAI46_23655at 5032.073 kb on + strand, within IAI46_23655at 5032.073 kb on + strand, within IAI46_23655at 5032.074 kb on - strand, within IAI46_23655at 5032.074 kb on - strand, within IAI46_23655at 5032.074 kb on - strand, within IAI46_23655at 5032.137 kb on + strand, within IAI46_23655at 5032.137 kb on + strand, within IAI46_23655at 5032.298 kb on + strand, within IAI46_23655at 5032.299 kb on - strand, within IAI46_23655at 5032.382 kb on + strand, within IAI46_23655at 5032.383 kb on - strand, within IAI46_23655at 5032.468 kb on - strand, within IAI46_23655at 5032.468 kb on - strand, within IAI46_23655at 5032.468 kb on - strand, within IAI46_23655at 5032.485 kb on + strand, within IAI46_23655at 5032.485 kb on + strand, within IAI46_23655at 5032.485 kb on + strand, within IAI46_23655at 5032.485 kb on + strand, within IAI46_23655at 5032.486 kb on - strand, within IAI46_23655at 5032.486 kb on - strand, within IAI46_23655at 5032.539 kb on + strand, within IAI46_23655at 5032.539 kb on + strand, within IAI46_23655at 5032.539 kb on + strand, within IAI46_23655at 5032.539 kb on + strand, within IAI46_23655at 5032.569 kb on - strand, within IAI46_23655at 5032.569 kb on - strand, within IAI46_23655at 5032.611 kb on + strand, within IAI46_23655at 5032.612 kb on - strand, within IAI46_23655at 5032.631 kb on + strand, within IAI46_23655at 5032.631 kb on + strand, within IAI46_23655at 5032.631 kb on + strand, within IAI46_23655at 5032.631 kb on + strand, within IAI46_23655at 5032.631 kb on + strand, within IAI46_23655at 5032.632 kb on - strand, within IAI46_23655at 5032.632 kb on - strand, within IAI46_23655at 5032.689 kb on + strand, within IAI46_23655at 5032.689 kb on + strand, within IAI46_23655at 5032.689 kb on + strand, within IAI46_23655at 5032.690 kb on - strand, within IAI46_23655at 5032.690 kb on - strand, within IAI46_23655at 5032.767 kb on + strand, within IAI46_23655at 5032.776 kb on + strand, within IAI46_23655at 5032.989 kb on + strand, within IAI46_23655at 5032.989 kb on + strand, within IAI46_23655at 5032.990 kb on - strand, within IAI46_23655at 5032.990 kb on - strand, within IAI46_23655at 5033.079 kb on - strand, within IAI46_23655at 5033.110 kb on - strand, within IAI46_23655at 5033.110 kb on - strand, within IAI46_23655at 5033.190 kb on + strand, within IAI46_23655at 5033.190 kb on + strand, within IAI46_23655at 5033.190 kb on + strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.191 kb on - strand, within IAI46_23655at 5033.205 kb on - strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.214 kb on + strand, within IAI46_23655at 5033.215 kb on - strand, within IAI46_23655at 5033.215 kb on - strand, within IAI46_23655at 5033.244 kb on - strand, within IAI46_23655at 5033.244 kb on - strand, within IAI46_23655at 5033.426 kb on + strandat 5033.427 kb on - strandat 5033.573 kb on - strandat 5033.646 kb on - strand, within IAI46_23660at 5033.646 kb on - strand, within IAI46_23660at 5033.677 kb on + strand, within IAI46_23660at 5033.677 kb on + strand, within IAI46_23660at 5033.678 kb on - strand, within IAI46_23660at 5033.793 kb on - strand, within IAI46_23660at 5033.793 kb on - strand, within IAI46_23660at 5033.880 kb on - strandat 5033.884 kb on + strandat 5033.884 kb on + strandat 5033.884 kb on + strandat 5034.012 kb on - strand, within IAI46_23665at 5034.012 kb on - strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.269 kb on + strand, within IAI46_23665at 5034.270 kb on - strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.272 kb on + strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.273 kb on - strand, within IAI46_23665at 5034.275 kb on + strand, within IAI46_23665at 5034.276 kb on - strand, within IAI46_23665at 5034.382 kb on + strand, within IAI46_23665at 5034.506 kb on - strand, within IAI46_23665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
5,030,089 + IAI46_23650 0.51 +0.6
5,030,090 - IAI46_23650 0.52 -0.7
5,030,267 + IAI46_23650 0.65 -0.1
5,030,310 + IAI46_23650 0.69 +0.8
5,030,310 + IAI46_23650 0.69 -0.4
5,030,356 + IAI46_23650 0.72 +0.3
5,030,357 - IAI46_23650 0.72 +0.3
5,030,357 - IAI46_23650 0.72 -0.0
5,030,615 + +0.1
5,030,671 - +0.0
5,030,687 + +0.7
5,030,688 - +0.3
5,030,749 + -0.4
5,030,749 + -0.7
5,030,749 + -1.2
5,030,749 + +0.0
5,030,750 - +0.7
5,030,857 + +0.9
5,030,898 - +0.3
5,030,900 - +0.9
5,030,913 + +1.4
5,030,913 + +0.5
5,030,913 + +0.3
5,030,914 - +0.1
5,030,915 + +0.7
5,030,916 - +0.2
5,030,916 - -0.1
5,030,916 - +0.2
5,030,964 - +0.4
5,030,969 - +1.4
5,030,974 + +0.1
5,030,998 + -0.8
5,031,103 + +0.0
5,031,153 + +0.3
5,031,154 - +0.2
5,031,154 - -0.3
5,031,221 - -1.0
5,031,221 - -0.2
5,031,300 + IAI46_23655 0.12 +0.1
5,031,301 - IAI46_23655 0.12 +0.3
5,031,303 + IAI46_23655 0.12 -0.1
5,031,303 + IAI46_23655 0.12 +0.1
5,031,304 - IAI46_23655 0.12 -1.2
5,031,449 - IAI46_23655 0.18 -0.1
5,031,517 + IAI46_23655 0.20 -1.1
5,031,517 + IAI46_23655 0.20 +0.1
5,031,518 - IAI46_23655 0.20 +1.1
5,031,518 - IAI46_23655 0.20 +1.0
5,031,518 - IAI46_23655 0.20 +0.1
5,031,577 + IAI46_23655 0.23 -0.0
5,031,577 + IAI46_23655 0.23 -0.7
5,031,577 + IAI46_23655 0.23 -0.2
5,031,577 + IAI46_23655 0.23 +1.1
5,031,577 + IAI46_23655 0.23 +0.2
5,031,577 + IAI46_23655 0.23 -1.2
5,031,578 - IAI46_23655 0.23 -0.2
5,031,626 + IAI46_23655 0.25 +0.0
5,031,829 - IAI46_23655 0.33 -0.6
5,031,904 + IAI46_23655 0.35 +0.7
5,031,904 + IAI46_23655 0.35 +0.5
5,031,905 - IAI46_23655 0.35 -0.0
5,031,982 + IAI46_23655 0.39 +0.7
5,032,035 + IAI46_23655 0.41 -0.9
5,032,035 + IAI46_23655 0.41 -0.1
5,032,041 + IAI46_23655 0.41 -0.1
5,032,073 + IAI46_23655 0.42 +0.1
5,032,073 + IAI46_23655 0.42 +0.2
5,032,074 - IAI46_23655 0.42 -0.1
5,032,074 - IAI46_23655 0.42 +0.2
5,032,074 - IAI46_23655 0.42 -0.4
5,032,137 + IAI46_23655 0.45 -0.1
5,032,137 + IAI46_23655 0.45 +0.1
5,032,298 + IAI46_23655 0.51 -0.2
5,032,299 - IAI46_23655 0.51 +0.0
5,032,382 + IAI46_23655 0.54 +0.8
5,032,383 - IAI46_23655 0.54 +0.2
5,032,468 - IAI46_23655 0.58 +0.6
5,032,468 - IAI46_23655 0.58 +0.1
5,032,468 - IAI46_23655 0.58 -0.9
5,032,485 + IAI46_23655 0.58 +0.8
5,032,485 + IAI46_23655 0.58 -0.6
5,032,485 + IAI46_23655 0.58 +0.1
5,032,485 + IAI46_23655 0.58 -0.3
5,032,486 - IAI46_23655 0.58 -0.1
5,032,486 - IAI46_23655 0.58 -0.1
5,032,539 + IAI46_23655 0.60 +0.4
5,032,539 + IAI46_23655 0.60 +0.4
5,032,539 + IAI46_23655 0.60 -0.1
5,032,539 + IAI46_23655 0.60 +1.3
5,032,569 - IAI46_23655 0.62 -0.7
5,032,569 - IAI46_23655 0.62 -0.7
5,032,611 + IAI46_23655 0.63 +0.4
5,032,612 - IAI46_23655 0.63 -0.6
5,032,631 + IAI46_23655 0.64 -0.7
5,032,631 + IAI46_23655 0.64 +0.0
5,032,631 + IAI46_23655 0.64 -0.2
5,032,631 + IAI46_23655 0.64 -0.0
5,032,631 + IAI46_23655 0.64 +0.0
5,032,632 - IAI46_23655 0.64 -0.1
5,032,632 - IAI46_23655 0.64 +0.7
5,032,689 + IAI46_23655 0.66 +0.0
5,032,689 + IAI46_23655 0.66 -0.8
5,032,689 + IAI46_23655 0.66 +0.6
5,032,690 - IAI46_23655 0.66 +1.1
5,032,690 - IAI46_23655 0.66 +0.2
5,032,767 + IAI46_23655 0.69 +0.5
5,032,776 + IAI46_23655 0.70 +0.1
5,032,989 + IAI46_23655 0.78 -0.1
5,032,989 + IAI46_23655 0.78 -0.1
5,032,990 - IAI46_23655 0.78 -0.1
5,032,990 - IAI46_23655 0.78 -0.4
5,033,079 - IAI46_23655 0.82 +0.3
5,033,110 - IAI46_23655 0.83 +0.7
5,033,110 - IAI46_23655 0.83 -0.1
5,033,190 + IAI46_23655 0.86 +0.1
5,033,190 + IAI46_23655 0.86 +0.7
5,033,190 + IAI46_23655 0.86 +0.0
5,033,191 - IAI46_23655 0.86 +0.3
5,033,191 - IAI46_23655 0.86 +1.3
5,033,191 - IAI46_23655 0.86 +0.5
5,033,191 - IAI46_23655 0.86 -0.2
5,033,205 - IAI46_23655 0.86 -0.6
5,033,214 + IAI46_23655 0.87 -0.4
5,033,214 + IAI46_23655 0.87 +0.7
5,033,214 + IAI46_23655 0.87 +1.7
5,033,214 + IAI46_23655 0.87 +0.5
5,033,214 + IAI46_23655 0.87 +0.5
5,033,215 - IAI46_23655 0.87 -1.3
5,033,215 - IAI46_23655 0.87 -1.4
5,033,244 - IAI46_23655 0.88 -0.8
5,033,244 - IAI46_23655 0.88 +0.2
5,033,426 + -0.5
5,033,427 - +0.5
5,033,573 - +0.1
5,033,646 - IAI46_23660 0.31 +0.7
5,033,646 - IAI46_23660 0.31 +0.9
5,033,677 + IAI46_23660 0.40 -0.3
5,033,677 + IAI46_23660 0.40 +0.0
5,033,678 - IAI46_23660 0.40 -1.3
5,033,793 - IAI46_23660 0.76 -0.9
5,033,793 - IAI46_23660 0.76 +0.1
5,033,880 - -1.5
5,033,884 + -0.1
5,033,884 + +0.7
5,033,884 + +1.1
5,034,012 - IAI46_23665 0.14 -0.4
5,034,012 - IAI46_23665 0.14 -0.1
5,034,269 + IAI46_23665 0.46 +0.4
5,034,269 + IAI46_23665 0.46 -0.4
5,034,269 + IAI46_23665 0.46 -0.5
5,034,269 + IAI46_23665 0.46 -0.0
5,034,270 - IAI46_23665 0.46 +1.8
5,034,272 + IAI46_23665 0.46 -1.9
5,034,272 + IAI46_23665 0.46 +0.2
5,034,272 + IAI46_23665 0.46 -0.1
5,034,272 + IAI46_23665 0.46 +0.8
5,034,272 + IAI46_23665 0.46 +0.0
5,034,273 - IAI46_23665 0.46 +1.4
5,034,273 - IAI46_23665 0.46 +1.6
5,034,273 - IAI46_23665 0.46 +0.5
5,034,273 - IAI46_23665 0.46 -0.1
5,034,275 + IAI46_23665 0.46 +0.0
5,034,276 - IAI46_23665 0.47 -0.5
5,034,382 + IAI46_23665 0.60 +0.8
5,034,506 - IAI46_23665 0.75 +0.1

Or see this region's nucleotide sequence