Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_23650 and IAI46_23655 are separated by 288 nucleotides IAI46_23655 and IAI46_23660 overlap by 4 nucleotides IAI46_23660 and IAI46_23665 are separated by 30 nucleotides
IAI46_23650: IAI46_23650 - cytosine deaminase, at 5,029,428 to 5,030,711
_23650
IAI46_23655: IAI46_23655 - nitrite reductase large subunit, at 5,031,000 to 5,033,549
_23655
IAI46_23660: IAI46_23660 - nitrite reductase small subunit NirD, at 5,033,546 to 5,033,872
_23660
IAI46_23665: IAI46_23665 - nitrite transporter NirC, at 5,033,903 to 5,034,703
_23665
Position (kb)
5030
5031
5032
5033
5034 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5030.089 kb on + strand, within IAI46_23650 at 5030.090 kb on - strand, within IAI46_23650 at 5030.267 kb on + strand, within IAI46_23650 at 5030.310 kb on + strand, within IAI46_23650 at 5030.310 kb on + strand, within IAI46_23650 at 5030.356 kb on + strand, within IAI46_23650 at 5030.357 kb on - strand, within IAI46_23650 at 5030.357 kb on - strand, within IAI46_23650 at 5030.615 kb on + strand at 5030.671 kb on - strand at 5030.687 kb on + strand at 5030.688 kb on - strand at 5030.749 kb on + strand at 5030.749 kb on + strand at 5030.749 kb on + strand at 5030.749 kb on + strand at 5030.750 kb on - strand at 5030.857 kb on + strand at 5030.898 kb on - strand at 5030.900 kb on - strand at 5030.913 kb on + strand at 5030.913 kb on + strand at 5030.913 kb on + strand at 5030.914 kb on - strand at 5030.915 kb on + strand at 5030.916 kb on - strand at 5030.916 kb on - strand at 5030.916 kb on - strand at 5030.964 kb on - strand at 5030.969 kb on - strand at 5030.974 kb on + strand at 5030.998 kb on + strand at 5031.103 kb on + strand at 5031.153 kb on + strand at 5031.154 kb on - strand at 5031.154 kb on - strand at 5031.221 kb on - strand at 5031.221 kb on - strand at 5031.300 kb on + strand, within IAI46_23655 at 5031.301 kb on - strand, within IAI46_23655 at 5031.303 kb on + strand, within IAI46_23655 at 5031.303 kb on + strand, within IAI46_23655 at 5031.304 kb on - strand, within IAI46_23655 at 5031.449 kb on - strand, within IAI46_23655 at 5031.517 kb on + strand, within IAI46_23655 at 5031.517 kb on + strand, within IAI46_23655 at 5031.518 kb on - strand, within IAI46_23655 at 5031.518 kb on - strand, within IAI46_23655 at 5031.518 kb on - strand, within IAI46_23655 at 5031.577 kb on + strand, within IAI46_23655 at 5031.577 kb on + strand, within IAI46_23655 at 5031.577 kb on + strand, within IAI46_23655 at 5031.577 kb on + strand, within IAI46_23655 at 5031.577 kb on + strand, within IAI46_23655 at 5031.577 kb on + strand, within IAI46_23655 at 5031.578 kb on - strand, within IAI46_23655 at 5031.626 kb on + strand, within IAI46_23655 at 5031.829 kb on - strand, within IAI46_23655 at 5031.904 kb on + strand, within IAI46_23655 at 5031.904 kb on + strand, within IAI46_23655 at 5031.905 kb on - strand, within IAI46_23655 at 5031.982 kb on + strand, within IAI46_23655 at 5032.035 kb on + strand, within IAI46_23655 at 5032.035 kb on + strand, within IAI46_23655 at 5032.041 kb on + strand, within IAI46_23655 at 5032.073 kb on + strand, within IAI46_23655 at 5032.073 kb on + strand, within IAI46_23655 at 5032.074 kb on - strand, within IAI46_23655 at 5032.074 kb on - strand, within IAI46_23655 at 5032.074 kb on - strand, within IAI46_23655 at 5032.137 kb on + strand, within IAI46_23655 at 5032.137 kb on + strand, within IAI46_23655 at 5032.298 kb on + strand, within IAI46_23655 at 5032.299 kb on - strand, within IAI46_23655 at 5032.382 kb on + strand, within IAI46_23655 at 5032.383 kb on - strand, within IAI46_23655 at 5032.468 kb on - strand, within IAI46_23655 at 5032.468 kb on - strand, within IAI46_23655 at 5032.468 kb on - strand, within IAI46_23655 at 5032.485 kb on + strand, within IAI46_23655 at 5032.485 kb on + strand, within IAI46_23655 at 5032.485 kb on + strand, within IAI46_23655 at 5032.485 kb on + strand, within IAI46_23655 at 5032.486 kb on - strand, within IAI46_23655 at 5032.486 kb on - strand, within IAI46_23655 at 5032.539 kb on + strand, within IAI46_23655 at 5032.539 kb on + strand, within IAI46_23655 at 5032.539 kb on + strand, within IAI46_23655 at 5032.539 kb on + strand, within IAI46_23655 at 5032.569 kb on - strand, within IAI46_23655 at 5032.569 kb on - strand, within IAI46_23655 at 5032.611 kb on + strand, within IAI46_23655 at 5032.612 kb on - strand, within IAI46_23655 at 5032.631 kb on + strand, within IAI46_23655 at 5032.631 kb on + strand, within IAI46_23655 at 5032.631 kb on + strand, within IAI46_23655 at 5032.631 kb on + strand, within IAI46_23655 at 5032.631 kb on + strand, within IAI46_23655 at 5032.632 kb on - strand, within IAI46_23655 at 5032.632 kb on - strand, within IAI46_23655 at 5032.689 kb on + strand, within IAI46_23655 at 5032.689 kb on + strand, within IAI46_23655 at 5032.689 kb on + strand, within IAI46_23655 at 5032.690 kb on - strand, within IAI46_23655 at 5032.690 kb on - strand, within IAI46_23655 at 5032.767 kb on + strand, within IAI46_23655 at 5032.776 kb on + strand, within IAI46_23655 at 5032.989 kb on + strand, within IAI46_23655 at 5032.989 kb on + strand, within IAI46_23655 at 5032.990 kb on - strand, within IAI46_23655 at 5032.990 kb on - strand, within IAI46_23655 at 5033.079 kb on - strand, within IAI46_23655 at 5033.110 kb on - strand, within IAI46_23655 at 5033.110 kb on - strand, within IAI46_23655 at 5033.190 kb on + strand, within IAI46_23655 at 5033.190 kb on + strand, within IAI46_23655 at 5033.190 kb on + strand, within IAI46_23655 at 5033.191 kb on - strand, within IAI46_23655 at 5033.191 kb on - strand, within IAI46_23655 at 5033.191 kb on - strand, within IAI46_23655 at 5033.191 kb on - strand, within IAI46_23655 at 5033.205 kb on - strand, within IAI46_23655 at 5033.214 kb on + strand, within IAI46_23655 at 5033.214 kb on + strand, within IAI46_23655 at 5033.214 kb on + strand, within IAI46_23655 at 5033.214 kb on + strand, within IAI46_23655 at 5033.214 kb on + strand, within IAI46_23655 at 5033.215 kb on - strand, within IAI46_23655 at 5033.215 kb on - strand, within IAI46_23655 at 5033.244 kb on - strand, within IAI46_23655 at 5033.244 kb on - strand, within IAI46_23655 at 5033.426 kb on + strand at 5033.427 kb on - strand at 5033.573 kb on - strand at 5033.646 kb on - strand, within IAI46_23660 at 5033.646 kb on - strand, within IAI46_23660 at 5033.677 kb on + strand, within IAI46_23660 at 5033.677 kb on + strand, within IAI46_23660 at 5033.678 kb on - strand, within IAI46_23660 at 5033.793 kb on - strand, within IAI46_23660 at 5033.793 kb on - strand, within IAI46_23660 at 5033.880 kb on - strand at 5033.884 kb on + strand at 5033.884 kb on + strand at 5033.884 kb on + strand at 5034.012 kb on - strand, within IAI46_23665 at 5034.012 kb on - strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.269 kb on + strand, within IAI46_23665 at 5034.270 kb on - strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.272 kb on + strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.273 kb on - strand, within IAI46_23665 at 5034.275 kb on + strand, within IAI46_23665 at 5034.276 kb on - strand, within IAI46_23665 at 5034.382 kb on + strand, within IAI46_23665 at 5034.506 kb on - strand, within IAI46_23665
Per-strain Table
Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic remove 5,030,089 + IAI46_23650 0.51 +0.6 5,030,090 - IAI46_23650 0.52 -0.7 5,030,267 + IAI46_23650 0.65 -0.1 5,030,310 + IAI46_23650 0.69 +0.8 5,030,310 + IAI46_23650 0.69 -0.4 5,030,356 + IAI46_23650 0.72 +0.3 5,030,357 - IAI46_23650 0.72 +0.3 5,030,357 - IAI46_23650 0.72 -0.0 5,030,615 + +0.1 5,030,671 - +0.0 5,030,687 + +0.7 5,030,688 - +0.3 5,030,749 + -0.4 5,030,749 + -0.7 5,030,749 + -1.2 5,030,749 + +0.0 5,030,750 - +0.7 5,030,857 + +0.9 5,030,898 - +0.3 5,030,900 - +0.9 5,030,913 + +1.4 5,030,913 + +0.5 5,030,913 + +0.3 5,030,914 - +0.1 5,030,915 + +0.7 5,030,916 - +0.2 5,030,916 - -0.1 5,030,916 - +0.2 5,030,964 - +0.4 5,030,969 - +1.4 5,030,974 + +0.1 5,030,998 + -0.8 5,031,103 + +0.0 5,031,153 + +0.3 5,031,154 - +0.2 5,031,154 - -0.3 5,031,221 - -1.0 5,031,221 - -0.2 5,031,300 + IAI46_23655 0.12 +0.1 5,031,301 - IAI46_23655 0.12 +0.3 5,031,303 + IAI46_23655 0.12 -0.1 5,031,303 + IAI46_23655 0.12 +0.1 5,031,304 - IAI46_23655 0.12 -1.2 5,031,449 - IAI46_23655 0.18 -0.1 5,031,517 + IAI46_23655 0.20 -1.1 5,031,517 + IAI46_23655 0.20 +0.1 5,031,518 - IAI46_23655 0.20 +1.1 5,031,518 - IAI46_23655 0.20 +1.0 5,031,518 - IAI46_23655 0.20 +0.1 5,031,577 + IAI46_23655 0.23 -0.0 5,031,577 + IAI46_23655 0.23 -0.7 5,031,577 + IAI46_23655 0.23 -0.2 5,031,577 + IAI46_23655 0.23 +1.1 5,031,577 + IAI46_23655 0.23 +0.2 5,031,577 + IAI46_23655 0.23 -1.2 5,031,578 - IAI46_23655 0.23 -0.2 5,031,626 + IAI46_23655 0.25 +0.0 5,031,829 - IAI46_23655 0.33 -0.6 5,031,904 + IAI46_23655 0.35 +0.7 5,031,904 + IAI46_23655 0.35 +0.5 5,031,905 - IAI46_23655 0.35 -0.0 5,031,982 + IAI46_23655 0.39 +0.7 5,032,035 + IAI46_23655 0.41 -0.9 5,032,035 + IAI46_23655 0.41 -0.1 5,032,041 + IAI46_23655 0.41 -0.1 5,032,073 + IAI46_23655 0.42 +0.1 5,032,073 + IAI46_23655 0.42 +0.2 5,032,074 - IAI46_23655 0.42 -0.1 5,032,074 - IAI46_23655 0.42 +0.2 5,032,074 - IAI46_23655 0.42 -0.4 5,032,137 + IAI46_23655 0.45 -0.1 5,032,137 + IAI46_23655 0.45 +0.1 5,032,298 + IAI46_23655 0.51 -0.2 5,032,299 - IAI46_23655 0.51 +0.0 5,032,382 + IAI46_23655 0.54 +0.8 5,032,383 - IAI46_23655 0.54 +0.2 5,032,468 - IAI46_23655 0.58 +0.6 5,032,468 - IAI46_23655 0.58 +0.1 5,032,468 - IAI46_23655 0.58 -0.9 5,032,485 + IAI46_23655 0.58 +0.8 5,032,485 + IAI46_23655 0.58 -0.6 5,032,485 + IAI46_23655 0.58 +0.1 5,032,485 + IAI46_23655 0.58 -0.3 5,032,486 - IAI46_23655 0.58 -0.1 5,032,486 - IAI46_23655 0.58 -0.1 5,032,539 + IAI46_23655 0.60 +0.4 5,032,539 + IAI46_23655 0.60 +0.4 5,032,539 + IAI46_23655 0.60 -0.1 5,032,539 + IAI46_23655 0.60 +1.3 5,032,569 - IAI46_23655 0.62 -0.7 5,032,569 - IAI46_23655 0.62 -0.7 5,032,611 + IAI46_23655 0.63 +0.4 5,032,612 - IAI46_23655 0.63 -0.6 5,032,631 + IAI46_23655 0.64 -0.7 5,032,631 + IAI46_23655 0.64 +0.0 5,032,631 + IAI46_23655 0.64 -0.2 5,032,631 + IAI46_23655 0.64 -0.0 5,032,631 + IAI46_23655 0.64 +0.0 5,032,632 - IAI46_23655 0.64 -0.1 5,032,632 - IAI46_23655 0.64 +0.7 5,032,689 + IAI46_23655 0.66 +0.0 5,032,689 + IAI46_23655 0.66 -0.8 5,032,689 + IAI46_23655 0.66 +0.6 5,032,690 - IAI46_23655 0.66 +1.1 5,032,690 - IAI46_23655 0.66 +0.2 5,032,767 + IAI46_23655 0.69 +0.5 5,032,776 + IAI46_23655 0.70 +0.1 5,032,989 + IAI46_23655 0.78 -0.1 5,032,989 + IAI46_23655 0.78 -0.1 5,032,990 - IAI46_23655 0.78 -0.1 5,032,990 - IAI46_23655 0.78 -0.4 5,033,079 - IAI46_23655 0.82 +0.3 5,033,110 - IAI46_23655 0.83 +0.7 5,033,110 - IAI46_23655 0.83 -0.1 5,033,190 + IAI46_23655 0.86 +0.1 5,033,190 + IAI46_23655 0.86 +0.7 5,033,190 + IAI46_23655 0.86 +0.0 5,033,191 - IAI46_23655 0.86 +0.3 5,033,191 - IAI46_23655 0.86 +1.3 5,033,191 - IAI46_23655 0.86 +0.5 5,033,191 - IAI46_23655 0.86 -0.2 5,033,205 - IAI46_23655 0.86 -0.6 5,033,214 + IAI46_23655 0.87 -0.4 5,033,214 + IAI46_23655 0.87 +0.7 5,033,214 + IAI46_23655 0.87 +1.7 5,033,214 + IAI46_23655 0.87 +0.5 5,033,214 + IAI46_23655 0.87 +0.5 5,033,215 - IAI46_23655 0.87 -1.3 5,033,215 - IAI46_23655 0.87 -1.4 5,033,244 - IAI46_23655 0.88 -0.8 5,033,244 - IAI46_23655 0.88 +0.2 5,033,426 + -0.5 5,033,427 - +0.5 5,033,573 - +0.1 5,033,646 - IAI46_23660 0.31 +0.7 5,033,646 - IAI46_23660 0.31 +0.9 5,033,677 + IAI46_23660 0.40 -0.3 5,033,677 + IAI46_23660 0.40 +0.0 5,033,678 - IAI46_23660 0.40 -1.3 5,033,793 - IAI46_23660 0.76 -0.9 5,033,793 - IAI46_23660 0.76 +0.1 5,033,880 - -1.5 5,033,884 + -0.1 5,033,884 + +0.7 5,033,884 + +1.1 5,034,012 - IAI46_23665 0.14 -0.4 5,034,012 - IAI46_23665 0.14 -0.1 5,034,269 + IAI46_23665 0.46 +0.4 5,034,269 + IAI46_23665 0.46 -0.4 5,034,269 + IAI46_23665 0.46 -0.5 5,034,269 + IAI46_23665 0.46 -0.0 5,034,270 - IAI46_23665 0.46 +1.8 5,034,272 + IAI46_23665 0.46 -1.9 5,034,272 + IAI46_23665 0.46 +0.2 5,034,272 + IAI46_23665 0.46 -0.1 5,034,272 + IAI46_23665 0.46 +0.8 5,034,272 + IAI46_23665 0.46 +0.0 5,034,273 - IAI46_23665 0.46 +1.4 5,034,273 - IAI46_23665 0.46 +1.6 5,034,273 - IAI46_23665 0.46 +0.5 5,034,273 - IAI46_23665 0.46 -0.1 5,034,275 + IAI46_23665 0.46 +0.0 5,034,276 - IAI46_23665 0.47 -0.5 5,034,382 + IAI46_23665 0.60 +0.8 5,034,506 - IAI46_23665 0.75 +0.1
Or see this region's nucleotide sequence