Strain Fitness in Serratia liquefaciens MT49 around IAI46_23630

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23625 and IAI46_23630 are separated by 357 nucleotidesIAI46_23630 and IAI46_23635 overlap by 4 nucleotides IAI46_23625: IAI46_23625 - peptidylprolyl isomerase A, at 5,024,222 to 5,024,791 _23625 IAI46_23630: IAI46_23630 - PTS lactose/cellobiose transporter subunit IIA, at 5,025,149 to 5,025,487 _23630 IAI46_23635: IAI46_23635 - 6-phospho-beta-glucosidase, at 5,025,484 to 5,026,791 _23635 Position (kb) 5025 5026Strain fitness (log2 ratio) -2 -1 0 1at 5024.254 kb on + strandat 5024.255 kb on - strandat 5024.255 kb on - strandat 5024.255 kb on - strandat 5024.255 kb on - strandat 5024.260 kb on + strandat 5024.261 kb on - strandat 5024.261 kb on - strandat 5024.318 kb on + strand, within IAI46_23625at 5024.318 kb on + strand, within IAI46_23625at 5024.318 kb on + strand, within IAI46_23625at 5024.318 kb on + strand, within IAI46_23625at 5024.318 kb on + strand, within IAI46_23625at 5024.425 kb on + strand, within IAI46_23625at 5024.426 kb on - strand, within IAI46_23625at 5024.426 kb on - strand, within IAI46_23625at 5024.426 kb on - strand, within IAI46_23625at 5024.426 kb on - strand, within IAI46_23625at 5024.437 kb on + strand, within IAI46_23625at 5024.462 kb on - strand, within IAI46_23625at 5024.542 kb on + strand, within IAI46_23625at 5024.563 kb on + strand, within IAI46_23625at 5024.563 kb on + strand, within IAI46_23625at 5024.590 kb on + strand, within IAI46_23625at 5024.590 kb on + strand, within IAI46_23625at 5024.591 kb on - strand, within IAI46_23625at 5024.591 kb on - strand, within IAI46_23625at 5024.591 kb on - strand, within IAI46_23625at 5024.591 kb on - strand, within IAI46_23625at 5024.601 kb on + strand, within IAI46_23625at 5024.601 kb on + strand, within IAI46_23625at 5024.605 kb on - strand, within IAI46_23625at 5024.619 kb on + strand, within IAI46_23625at 5024.619 kb on + strand, within IAI46_23625at 5024.620 kb on - strand, within IAI46_23625at 5024.620 kb on - strand, within IAI46_23625at 5024.775 kb on - strandat 5024.775 kb on - strandat 5024.775 kb on - strandat 5024.779 kb on + strandat 5024.808 kb on + strandat 5024.842 kb on - strandat 5024.842 kb on - strandat 5024.872 kb on + strandat 5024.899 kb on + strandat 5024.899 kb on + strandat 5024.899 kb on + strandat 5024.900 kb on - strandat 5024.900 kb on - strandat 5024.921 kb on + strandat 5024.933 kb on + strandat 5024.945 kb on - strandat 5024.945 kb on - strandat 5025.133 kb on + strandat 5025.134 kb on - strandat 5025.134 kb on - strandat 5025.262 kb on + strand, within IAI46_23630at 5025.380 kb on - strand, within IAI46_23630at 5025.527 kb on - strandat 5025.527 kb on - strandat 5025.561 kb on + strandat 5025.561 kb on + strandat 5025.562 kb on - strandat 5025.562 kb on - strandat 5025.596 kb on + strandat 5025.624 kb on - strand, within IAI46_23635at 5025.809 kb on + strand, within IAI46_23635at 5025.860 kb on + strand, within IAI46_23635at 5025.967 kb on + strand, within IAI46_23635at 5025.967 kb on + strand, within IAI46_23635at 5025.968 kb on - strand, within IAI46_23635at 5025.996 kb on + strand, within IAI46_23635at 5025.997 kb on - strand, within IAI46_23635at 5025.997 kb on - strand, within IAI46_23635at 5026.001 kb on + strand, within IAI46_23635at 5026.020 kb on + strand, within IAI46_23635at 5026.020 kb on + strand, within IAI46_23635at 5026.021 kb on - strand, within IAI46_23635at 5026.021 kb on - strand, within IAI46_23635at 5026.058 kb on + strand, within IAI46_23635at 5026.059 kb on - strand, within IAI46_23635at 5026.086 kb on + strand, within IAI46_23635at 5026.086 kb on + strand, within IAI46_23635at 5026.087 kb on - strand, within IAI46_23635at 5026.243 kb on + strand, within IAI46_23635at 5026.259 kb on - strand, within IAI46_23635at 5026.259 kb on - strand, within IAI46_23635at 5026.337 kb on + strand, within IAI46_23635at 5026.360 kb on + strand, within IAI46_23635at 5026.360 kb on + strand, within IAI46_23635at 5026.397 kb on + strand, within IAI46_23635at 5026.397 kb on + strand, within IAI46_23635at 5026.398 kb on - strand, within IAI46_23635at 5026.398 kb on - strand, within IAI46_23635at 5026.398 kb on - strand, within IAI46_23635at 5026.417 kb on + strand, within IAI46_23635at 5026.417 kb on + strand, within IAI46_23635at 5026.421 kb on - strand, within IAI46_23635at 5026.421 kb on - strand, within IAI46_23635at 5026.443 kb on - strand, within IAI46_23635at 5026.459 kb on - strand, within IAI46_23635at 5026.461 kb on + strand, within IAI46_23635at 5026.478 kb on + strand, within IAI46_23635at 5026.479 kb on - strand, within IAI46_23635at 5026.479 kb on - strand, within IAI46_23635at 5026.479 kb on - strand, within IAI46_23635

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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5,024,254 + -0.3
5,024,255 - +0.3
5,024,255 - +1.1
5,024,255 - -0.1
5,024,255 - -1.8
5,024,260 + -0.7
5,024,261 - +1.0
5,024,261 - +1.5
5,024,318 + IAI46_23625 0.17 -0.1
5,024,318 + IAI46_23625 0.17 +0.5
5,024,318 + IAI46_23625 0.17 -1.1
5,024,318 + IAI46_23625 0.17 -1.2
5,024,318 + IAI46_23625 0.17 -0.7
5,024,425 + IAI46_23625 0.36 -0.7
5,024,426 - IAI46_23625 0.36 +0.3
5,024,426 - IAI46_23625 0.36 -0.2
5,024,426 - IAI46_23625 0.36 +0.1
5,024,426 - IAI46_23625 0.36 -0.3
5,024,437 + IAI46_23625 0.38 +0.8
5,024,462 - IAI46_23625 0.42 +0.7
5,024,542 + IAI46_23625 0.56 +0.1
5,024,563 + IAI46_23625 0.60 -1.1
5,024,563 + IAI46_23625 0.60 +0.7
5,024,590 + IAI46_23625 0.65 -0.3
5,024,590 + IAI46_23625 0.65 +0.8
5,024,591 - IAI46_23625 0.65 -0.2
5,024,591 - IAI46_23625 0.65 +0.2
5,024,591 - IAI46_23625 0.65 -0.2
5,024,591 - IAI46_23625 0.65 +0.4
5,024,601 + IAI46_23625 0.66 +0.7
5,024,601 + IAI46_23625 0.66 +0.2
5,024,605 - IAI46_23625 0.67 -0.6
5,024,619 + IAI46_23625 0.70 +0.6
5,024,619 + IAI46_23625 0.70 -0.1
5,024,620 - IAI46_23625 0.70 -0.0
5,024,620 - IAI46_23625 0.70 -1.0
5,024,775 - -0.4
5,024,775 - -0.3
5,024,775 - +0.3
5,024,779 + -0.8
5,024,808 + -1.8
5,024,842 - -1.6
5,024,842 - -0.4
5,024,872 + +0.2
5,024,899 + -0.7
5,024,899 + -0.3
5,024,899 + -0.8
5,024,900 - +0.4
5,024,900 - -1.1
5,024,921 + +0.5
5,024,933 + +0.0
5,024,945 - +0.5
5,024,945 - +0.2
5,025,133 + +1.1
5,025,134 - +0.4
5,025,134 - -0.0
5,025,262 + IAI46_23630 0.33 -2.2
5,025,380 - IAI46_23630 0.68 -1.1
5,025,527 - +0.1
5,025,527 - -0.1
5,025,561 + -0.3
5,025,561 + +0.3
5,025,562 - +0.1
5,025,562 - +0.8
5,025,596 + -0.1
5,025,624 - IAI46_23635 0.11 +0.3
5,025,809 + IAI46_23635 0.25 +0.1
5,025,860 + IAI46_23635 0.29 -0.1
5,025,967 + IAI46_23635 0.37 +0.4
5,025,967 + IAI46_23635 0.37 -0.0
5,025,968 - IAI46_23635 0.37 +0.2
5,025,996 + IAI46_23635 0.39 -0.0
5,025,997 - IAI46_23635 0.39 -0.1
5,025,997 - IAI46_23635 0.39 +1.3
5,026,001 + IAI46_23635 0.40 +0.1
5,026,020 + IAI46_23635 0.41 +0.1
5,026,020 + IAI46_23635 0.41 -0.1
5,026,021 - IAI46_23635 0.41 +0.2
5,026,021 - IAI46_23635 0.41 +0.0
5,026,058 + IAI46_23635 0.44 +0.3
5,026,059 - IAI46_23635 0.44 +0.1
5,026,086 + IAI46_23635 0.46 +0.5
5,026,086 + IAI46_23635 0.46 +0.0
5,026,087 - IAI46_23635 0.46 +0.5
5,026,243 + IAI46_23635 0.58 -0.0
5,026,259 - IAI46_23635 0.59 -1.0
5,026,259 - IAI46_23635 0.59 -0.5
5,026,337 + IAI46_23635 0.65 -0.8
5,026,360 + IAI46_23635 0.67 -0.1
5,026,360 + IAI46_23635 0.67 +0.5
5,026,397 + IAI46_23635 0.70 -0.6
5,026,397 + IAI46_23635 0.70 +0.5
5,026,398 - IAI46_23635 0.70 -0.5
5,026,398 - IAI46_23635 0.70 -0.2
5,026,398 - IAI46_23635 0.70 -0.7
5,026,417 + IAI46_23635 0.71 +1.1
5,026,417 + IAI46_23635 0.71 -0.2
5,026,421 - IAI46_23635 0.72 -1.6
5,026,421 - IAI46_23635 0.72 +1.3
5,026,443 - IAI46_23635 0.73 -1.0
5,026,459 - IAI46_23635 0.75 +1.3
5,026,461 + IAI46_23635 0.75 -1.2
5,026,478 + IAI46_23635 0.76 +1.0
5,026,479 - IAI46_23635 0.76 -0.2
5,026,479 - IAI46_23635 0.76 -0.0
5,026,479 - IAI46_23635 0.76 -0.5

Or see this region's nucleotide sequence