Strain Fitness in Serratia liquefaciens MT49 around IAI46_23025

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23015 and IAI46_23020 are separated by 59 nucleotidesIAI46_23020 and IAI46_23025 overlap by 4 nucleotidesIAI46_23025 and IAI46_23030 are separated by 391 nucleotides IAI46_23015: IAI46_23015 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 4,905,835 to 4,908,300 _23015 IAI46_23020: IAI46_23020 - 4-hydroxybenzoate octaprenyltransferase, at 4,908,360 to 4,909,253 _23020 IAI46_23025: IAI46_23025 - chorismate lyase, at 4,909,250 to 4,909,774 _23025 IAI46_23030: IAI46_23030 - MHS family MFS transporter, at 4,910,166 to 4,911,548 _23030 Position (kb) 4909 4910Strain fitness (log2 ratio) -3 -2 -1 0 1at 4908.301 kb on + strandat 4908.302 kb on - strandat 4908.302 kb on - strandat 4908.373 kb on + strandat 4908.374 kb on - strandat 4909.264 kb on + strandat 4909.265 kb on - strandat 4909.265 kb on - strandat 4909.295 kb on + strandat 4909.382 kb on + strand, within IAI46_23025at 4909.386 kb on + strand, within IAI46_23025at 4909.387 kb on - strand, within IAI46_23025at 4909.387 kb on - strand, within IAI46_23025at 4909.397 kb on + strand, within IAI46_23025at 4909.412 kb on - strand, within IAI46_23025at 4909.419 kb on + strand, within IAI46_23025at 4909.420 kb on - strand, within IAI46_23025at 4909.677 kb on - strand, within IAI46_23025at 4909.677 kb on - strand, within IAI46_23025at 4909.677 kb on - strand, within IAI46_23025at 4909.781 kb on - strandat 4909.781 kb on - strandat 4909.848 kb on + strandat 4909.953 kb on - strandat 4910.033 kb on + strandat 4910.133 kb on + strandat 4910.134 kb on - strandat 4910.156 kb on + strandat 4910.157 kb on - strandat 4910.301 kb on + strandat 4910.301 kb on + strandat 4910.302 kb on - strandat 4910.302 kb on - strandat 4910.302 kb on - strandat 4910.302 kb on - strandat 4910.318 kb on - strand, within IAI46_23030at 4910.318 kb on - strand, within IAI46_23030at 4910.318 kb on - strand, within IAI46_23030at 4910.319 kb on + strand, within IAI46_23030at 4910.319 kb on + strand, within IAI46_23030at 4910.320 kb on - strand, within IAI46_23030at 4910.320 kb on - strand, within IAI46_23030at 4910.407 kb on - strand, within IAI46_23030at 4910.485 kb on + strand, within IAI46_23030at 4910.486 kb on - strand, within IAI46_23030at 4910.519 kb on + strand, within IAI46_23030at 4910.520 kb on - strand, within IAI46_23030at 4910.547 kb on + strand, within IAI46_23030at 4910.547 kb on + strand, within IAI46_23030at 4910.548 kb on - strand, within IAI46_23030

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,908,301 + -1.0
4,908,302 - -0.8
4,908,302 - -0.8
4,908,373 + +0.7
4,908,374 - -0.2
4,909,264 + -0.5
4,909,265 - +0.2
4,909,265 - +0.7
4,909,295 + -0.0
4,909,382 + IAI46_23025 0.25 -2.8
4,909,386 + IAI46_23025 0.26 -1.4
4,909,387 - IAI46_23025 0.26 +0.1
4,909,387 - IAI46_23025 0.26 -0.3
4,909,397 + IAI46_23025 0.28 -0.3
4,909,412 - IAI46_23025 0.31 +0.9
4,909,419 + IAI46_23025 0.32 -3.0
4,909,420 - IAI46_23025 0.32 +0.4
4,909,677 - IAI46_23025 0.81 +0.3
4,909,677 - IAI46_23025 0.81 -0.5
4,909,677 - IAI46_23025 0.81 -0.1
4,909,781 - +0.4
4,909,781 - -1.5
4,909,848 + +0.3
4,909,953 - -0.1
4,910,033 + +0.0
4,910,133 + +0.6
4,910,134 - +0.7
4,910,156 + -1.2
4,910,157 - +0.1
4,910,301 + +0.1
4,910,301 + +0.5
4,910,302 - +1.2
4,910,302 - -0.5
4,910,302 - +0.5
4,910,302 - +0.3
4,910,318 - IAI46_23030 0.11 -0.0
4,910,318 - IAI46_23030 0.11 +0.3
4,910,318 - IAI46_23030 0.11 +0.6
4,910,319 + IAI46_23030 0.11 -0.2
4,910,319 + IAI46_23030 0.11 +1.2
4,910,320 - IAI46_23030 0.11 -0.1
4,910,320 - IAI46_23030 0.11 +0.2
4,910,407 - IAI46_23030 0.17 +0.2
4,910,485 + IAI46_23030 0.23 +0.6
4,910,486 - IAI46_23030 0.23 +0.0
4,910,519 + IAI46_23030 0.26 +0.0
4,910,520 - IAI46_23030 0.26 +0.1
4,910,547 + IAI46_23030 0.28 +0.6
4,910,547 + IAI46_23030 0.28 +0.3
4,910,548 - IAI46_23030 0.28 +0.3

Or see this region's nucleotide sequence