Strain Fitness in Serratia liquefaciens MT49 around IAI46_22645

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22635 and IAI46_22640 are separated by 144 nucleotidesIAI46_22640 and IAI46_22645 overlap by 1 nucleotidesIAI46_22645 and IAI46_22650 are separated by 81 nucleotidesIAI46_22650 and IAI46_22655 overlap by 4 nucleotides IAI46_22635: IAI46_22635 - nucleoside hydrolase, at 4,809,453 to 4,810,397 _22635 IAI46_22640: IAI46_22640 - hypothetical protein, at 4,810,542 to 4,811,081 _22640 IAI46_22645: IAI46_22645 - pretoxin, at 4,811,081 to 4,811,365 _22645 IAI46_22650: IAI46_22650 - hypothetical protein, at 4,811,447 to 4,811,812 _22650 IAI46_22655: IAI46_22655 - hypothetical protein, at 4,811,809 to 4,812,090 _22655 Position (kb) 4811 4812Strain fitness (log2 ratio) -2 -1 0 1 2at 4810.132 kb on - strand, within IAI46_22635at 4810.189 kb on - strand, within IAI46_22635at 4810.232 kb on - strand, within IAI46_22635at 4810.236 kb on - strand, within IAI46_22635at 4810.310 kb on + strandat 4810.310 kb on + strandat 4810.319 kb on - strandat 4810.319 kb on - strandat 4810.324 kb on + strandat 4810.369 kb on + strandat 4810.395 kb on + strandat 4810.395 kb on + strandat 4810.395 kb on + strandat 4810.422 kb on - strandat 4810.506 kb on + strandat 4810.517 kb on - strandat 4810.540 kb on - strandat 4810.550 kb on + strandat 4810.570 kb on - strandat 4810.713 kb on + strand, within IAI46_22640at 4810.714 kb on - strand, within IAI46_22640at 4810.715 kb on + strand, within IAI46_22640at 4810.717 kb on + strand, within IAI46_22640at 4810.719 kb on + strand, within IAI46_22640at 4810.868 kb on + strand, within IAI46_22640at 4811.000 kb on + strand, within IAI46_22640at 4811.086 kb on + strandat 4811.088 kb on + strandat 4811.138 kb on + strand, within IAI46_22645at 4811.251 kb on + strand, within IAI46_22645at 4811.251 kb on + strand, within IAI46_22645at 4811.252 kb on - strand, within IAI46_22645at 4811.254 kb on + strand, within IAI46_22645at 4811.255 kb on - strand, within IAI46_22645at 4811.255 kb on - strand, within IAI46_22645at 4811.281 kb on - strand, within IAI46_22645at 4811.290 kb on + strand, within IAI46_22645at 4811.291 kb on - strand, within IAI46_22645at 4811.299 kb on + strand, within IAI46_22645at 4811.299 kb on + strand, within IAI46_22645at 4811.320 kb on + strand, within IAI46_22645at 4811.320 kb on + strand, within IAI46_22645at 4811.321 kb on - strand, within IAI46_22645at 4811.321 kb on - strand, within IAI46_22645at 4811.339 kb on + strandat 4811.340 kb on - strandat 4811.401 kb on - strandat 4811.417 kb on - strandat 4811.448 kb on + strandat 4811.452 kb on + strandat 4811.453 kb on - strandat 4811.453 kb on - strandat 4811.460 kb on + strandat 4811.461 kb on - strandat 4811.464 kb on + strandat 4811.467 kb on - strandat 4811.467 kb on - strandat 4811.467 kb on - strandat 4811.467 kb on - strandat 4811.467 kb on - strandat 4811.495 kb on + strand, within IAI46_22650at 4811.542 kb on + strand, within IAI46_22650at 4811.577 kb on + strand, within IAI46_22650at 4811.577 kb on + strand, within IAI46_22650at 4811.578 kb on - strand, within IAI46_22650at 4811.587 kb on + strand, within IAI46_22650at 4811.587 kb on + strand, within IAI46_22650at 4811.588 kb on - strand, within IAI46_22650at 4811.594 kb on + strand, within IAI46_22650at 4811.595 kb on - strand, within IAI46_22650at 4811.643 kb on - strand, within IAI46_22650at 4811.653 kb on + strand, within IAI46_22650at 4811.654 kb on - strand, within IAI46_22650at 4811.663 kb on - strand, within IAI46_22650at 4811.666 kb on + strand, within IAI46_22650at 4811.667 kb on - strand, within IAI46_22650at 4811.701 kb on + strand, within IAI46_22650at 4811.702 kb on - strand, within IAI46_22650at 4811.753 kb on + strand, within IAI46_22650at 4811.878 kb on - strand, within IAI46_22655at 4811.980 kb on - strand, within IAI46_22655at 4811.997 kb on + strand, within IAI46_22655at 4812.000 kb on - strand, within IAI46_22655at 4812.018 kb on - strand, within IAI46_22655at 4812.019 kb on + strand, within IAI46_22655at 4812.020 kb on - strand, within IAI46_22655at 4812.020 kb on - strand, within IAI46_22655at 4812.049 kb on - strand, within IAI46_22655at 4812.098 kb on - strandat 4812.098 kb on - strandat 4812.119 kb on + strandat 4812.120 kb on - strandat 4812.120 kb on - strandat 4812.120 kb on - strandat 4812.129 kb on + strandat 4812.138 kb on + strandat 4812.139 kb on - strandat 4812.139 kb on - strandat 4812.142 kb on + strandat 4812.142 kb on + strandat 4812.142 kb on + strandat 4812.143 kb on - strandat 4812.143 kb on - strandat 4812.143 kb on - strandat 4812.143 kb on - strandat 4812.143 kb on - strandat 4812.143 kb on - strandat 4812.169 kb on - strandat 4812.169 kb on - strandat 4812.169 kb on - strandat 4812.193 kb on + strandat 4812.194 kb on - strandat 4812.202 kb on + strandat 4812.202 kb on + strandat 4812.236 kb on + strandat 4812.237 kb on - strandat 4812.237 kb on - strandat 4812.254 kb on + strandat 4812.255 kb on - strandat 4812.271 kb on - strandat 4812.330 kb on + strandat 4812.331 kb on - strandat 4812.337 kb on + strandat 4812.337 kb on + strandat 4812.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,810,132 - IAI46_22635 0.72 +0.7
4,810,189 - IAI46_22635 0.78 -0.6
4,810,232 - IAI46_22635 0.82 -0.3
4,810,236 - IAI46_22635 0.83 +0.7
4,810,310 + -0.4
4,810,310 + +0.9
4,810,319 - +0.8
4,810,319 - +0.0
4,810,324 + -0.1
4,810,369 + +0.3
4,810,395 + -0.5
4,810,395 + +0.5
4,810,395 + +0.4
4,810,422 - +0.8
4,810,506 + -0.2
4,810,517 - +1.2
4,810,540 - -0.1
4,810,550 + +0.6
4,810,570 - +0.8
4,810,713 + IAI46_22640 0.32 +0.7
4,810,714 - IAI46_22640 0.32 -0.8
4,810,715 + IAI46_22640 0.32 +1.0
4,810,717 + IAI46_22640 0.32 -0.2
4,810,719 + IAI46_22640 0.33 +0.7
4,810,868 + IAI46_22640 0.60 -0.9
4,811,000 + IAI46_22640 0.85 +0.6
4,811,086 + +0.1
4,811,088 + +0.4
4,811,138 + IAI46_22645 0.20 +0.5
4,811,251 + IAI46_22645 0.60 -0.8
4,811,251 + IAI46_22645 0.60 -1.0
4,811,252 - IAI46_22645 0.60 +0.0
4,811,254 + IAI46_22645 0.61 -0.5
4,811,255 - IAI46_22645 0.61 -0.2
4,811,255 - IAI46_22645 0.61 +0.7
4,811,281 - IAI46_22645 0.70 +0.4
4,811,290 + IAI46_22645 0.73 -1.0
4,811,291 - IAI46_22645 0.74 -0.2
4,811,299 + IAI46_22645 0.76 -0.2
4,811,299 + IAI46_22645 0.76 +0.4
4,811,320 + IAI46_22645 0.84 +0.9
4,811,320 + IAI46_22645 0.84 -0.8
4,811,321 - IAI46_22645 0.84 -0.6
4,811,321 - IAI46_22645 0.84 +0.4
4,811,339 + -0.1
4,811,340 - -0.2
4,811,401 - -0.3
4,811,417 - +0.1
4,811,448 + +0.1
4,811,452 + +0.8
4,811,453 - -0.2
4,811,453 - -0.0
4,811,460 + +0.5
4,811,461 - +0.1
4,811,464 + +0.2
4,811,467 - +0.1
4,811,467 - +0.6
4,811,467 - +0.7
4,811,467 - -0.0
4,811,467 - +0.3
4,811,495 + IAI46_22650 0.13 -2.2
4,811,542 + IAI46_22650 0.26 +1.6
4,811,577 + IAI46_22650 0.36 +0.6
4,811,577 + IAI46_22650 0.36 -0.2
4,811,578 - IAI46_22650 0.36 +2.2
4,811,587 + IAI46_22650 0.38 -0.2
4,811,587 + IAI46_22650 0.38 -0.9
4,811,588 - IAI46_22650 0.39 +0.6
4,811,594 + IAI46_22650 0.40 +0.1
4,811,595 - IAI46_22650 0.40 +0.2
4,811,643 - IAI46_22650 0.54 -0.0
4,811,653 + IAI46_22650 0.56 -0.1
4,811,654 - IAI46_22650 0.57 -0.8
4,811,663 - IAI46_22650 0.59 +0.7
4,811,666 + IAI46_22650 0.60 -0.4
4,811,667 - IAI46_22650 0.60 -0.7
4,811,701 + IAI46_22650 0.69 +0.2
4,811,702 - IAI46_22650 0.70 +0.2
4,811,753 + IAI46_22650 0.84 -0.0
4,811,878 - IAI46_22655 0.24 -0.3
4,811,980 - IAI46_22655 0.61 +1.3
4,811,997 + IAI46_22655 0.67 +0.9
4,812,000 - IAI46_22655 0.68 -0.8
4,812,018 - IAI46_22655 0.74 +0.4
4,812,019 + IAI46_22655 0.74 -0.6
4,812,020 - IAI46_22655 0.75 +0.1
4,812,020 - IAI46_22655 0.75 +0.4
4,812,049 - IAI46_22655 0.85 +0.2
4,812,098 - -0.2
4,812,098 - -0.2
4,812,119 + +0.1
4,812,120 - +0.9
4,812,120 - +0.4
4,812,120 - -0.4
4,812,129 + +1.1
4,812,138 + +0.3
4,812,139 - +0.4
4,812,139 - -0.4
4,812,142 + -0.1
4,812,142 + +0.7
4,812,142 + -1.0
4,812,143 - -0.2
4,812,143 - -0.1
4,812,143 - +0.9
4,812,143 - +1.3
4,812,143 - +0.4
4,812,143 - +0.2
4,812,169 - -0.3
4,812,169 - +0.3
4,812,169 - +1.1
4,812,193 + +0.0
4,812,194 - +1.1
4,812,202 + +1.3
4,812,202 + +1.1
4,812,236 + +0.8
4,812,237 - +0.5
4,812,237 - +1.0
4,812,254 + -0.4
4,812,255 - +0.9
4,812,271 - +0.3
4,812,330 + +0.4
4,812,331 - +0.3
4,812,337 + -0.2
4,812,337 + +0.8
4,812,338 - +0.2

Or see this region's nucleotide sequence