Strain Fitness in Serratia liquefaciens MT49 around IAI46_22615

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22605 and IAI46_22610 overlap by 1 nucleotidesIAI46_22610 and IAI46_22615 are separated by 7 nucleotidesIAI46_22615 and IAI46_22620 are separated by 439 nucleotides IAI46_22605: IAI46_22605 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 4,804,156 to 4,806,123 _22605 IAI46_22610: IAI46_22610 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 4,806,123 to 4,807,058 _22610 IAI46_22615: IAI46_22615 - AaeX family protein, at 4,807,066 to 4,807,269 _22615 IAI46_22620: IAI46_22620 - HTH-type transcriptional activator AaeR, at 4,807,709 to 4,808,620 _22620 Position (kb) 4807 4808Strain fitness (log2 ratio) -1 0 1 2at 4806.117 kb on + strandat 4806.180 kb on - strandat 4806.222 kb on - strand, within IAI46_22610at 4806.357 kb on - strand, within IAI46_22610at 4806.398 kb on + strand, within IAI46_22610at 4806.398 kb on + strand, within IAI46_22610at 4806.399 kb on - strand, within IAI46_22610at 4806.473 kb on - strand, within IAI46_22610at 4806.535 kb on + strand, within IAI46_22610at 4806.536 kb on - strand, within IAI46_22610at 4806.536 kb on - strand, within IAI46_22610at 4806.657 kb on + strand, within IAI46_22610at 4806.657 kb on + strand, within IAI46_22610at 4806.658 kb on - strand, within IAI46_22610at 4806.675 kb on - strand, within IAI46_22610at 4806.688 kb on - strand, within IAI46_22610at 4806.769 kb on + strand, within IAI46_22610at 4806.770 kb on - strand, within IAI46_22610at 4806.770 kb on - strand, within IAI46_22610at 4806.772 kb on + strand, within IAI46_22610at 4806.772 kb on + strand, within IAI46_22610at 4806.772 kb on + strand, within IAI46_22610at 4806.773 kb on - strand, within IAI46_22610at 4806.964 kb on + strand, within IAI46_22610at 4807.091 kb on + strand, within IAI46_22615at 4807.106 kb on + strand, within IAI46_22615at 4807.106 kb on + strand, within IAI46_22615at 4807.107 kb on - strand, within IAI46_22615at 4807.117 kb on - strand, within IAI46_22615at 4807.149 kb on - strand, within IAI46_22615at 4807.281 kb on + strandat 4807.282 kb on - strandat 4807.284 kb on + strandat 4807.285 kb on - strandat 4807.285 kb on - strandat 4807.303 kb on - strandat 4807.310 kb on + strandat 4807.310 kb on + strandat 4807.311 kb on - strandat 4807.311 kb on - strandat 4807.311 kb on - strandat 4807.311 kb on - strandat 4807.312 kb on + strandat 4807.343 kb on - strandat 4807.343 kb on - strandat 4807.343 kb on - strandat 4807.343 kb on - strandat 4807.365 kb on + strandat 4807.365 kb on + strandat 4807.366 kb on - strandat 4807.366 kb on - strandat 4807.366 kb on - strandat 4807.369 kb on - strandat 4807.372 kb on - strandat 4807.372 kb on - strandat 4807.372 kb on - strandat 4807.424 kb on + strandat 4807.424 kb on + strandat 4807.425 kb on - strandat 4807.426 kb on + strandat 4807.426 kb on + strandat 4807.426 kb on + strandat 4807.427 kb on - strandat 4807.427 kb on - strandat 4807.432 kb on - strandat 4807.433 kb on + strandat 4807.539 kb on + strandat 4807.539 kb on + strandat 4807.540 kb on - strandat 4807.540 kb on - strandat 4807.640 kb on - strandat 4807.642 kb on - strandat 4807.653 kb on + strandat 4807.654 kb on - strandat 4807.656 kb on + strandat 4807.657 kb on - strandat 4807.735 kb on - strandat 4807.765 kb on + strandat 4807.766 kb on - strandat 4807.790 kb on - strandat 4807.901 kb on + strand, within IAI46_22620at 4807.905 kb on - strand, within IAI46_22620at 4807.959 kb on - strand, within IAI46_22620at 4807.959 kb on - strand, within IAI46_22620at 4807.972 kb on + strand, within IAI46_22620at 4808.048 kb on - strand, within IAI46_22620at 4808.048 kb on - strand, within IAI46_22620at 4808.060 kb on + strand, within IAI46_22620at 4808.220 kb on - strand, within IAI46_22620

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,806,117 + +0.5
4,806,180 - +0.5
4,806,222 - IAI46_22610 0.11 -0.1
4,806,357 - IAI46_22610 0.25 +1.0
4,806,398 + IAI46_22610 0.29 +0.1
4,806,398 + IAI46_22610 0.29 +0.7
4,806,399 - IAI46_22610 0.29 +0.2
4,806,473 - IAI46_22610 0.37 +0.5
4,806,535 + IAI46_22610 0.44 +0.7
4,806,536 - IAI46_22610 0.44 +0.1
4,806,536 - IAI46_22610 0.44 +0.3
4,806,657 + IAI46_22610 0.57 -0.4
4,806,657 + IAI46_22610 0.57 -0.6
4,806,658 - IAI46_22610 0.57 -0.2
4,806,675 - IAI46_22610 0.59 +0.6
4,806,688 - IAI46_22610 0.60 +0.2
4,806,769 + IAI46_22610 0.69 -0.2
4,806,770 - IAI46_22610 0.69 +1.0
4,806,770 - IAI46_22610 0.69 -0.2
4,806,772 + IAI46_22610 0.69 +0.4
4,806,772 + IAI46_22610 0.69 +0.3
4,806,772 + IAI46_22610 0.69 +0.5
4,806,773 - IAI46_22610 0.69 -1.6
4,806,964 + IAI46_22610 0.90 +0.8
4,807,091 + IAI46_22615 0.12 +1.3
4,807,106 + IAI46_22615 0.20 -0.0
4,807,106 + IAI46_22615 0.20 +0.2
4,807,107 - IAI46_22615 0.20 +0.8
4,807,117 - IAI46_22615 0.25 -0.8
4,807,149 - IAI46_22615 0.41 +0.4
4,807,281 + +0.8
4,807,282 - -1.2
4,807,284 + +0.5
4,807,285 - +0.9
4,807,285 - -0.0
4,807,303 - -0.1
4,807,310 + +0.1
4,807,310 + +0.2
4,807,311 - +0.9
4,807,311 - +0.2
4,807,311 - +0.5
4,807,311 - +0.2
4,807,312 + +0.4
4,807,343 - +1.0
4,807,343 - +0.7
4,807,343 - -0.7
4,807,343 - +0.7
4,807,365 + +0.4
4,807,365 + -0.4
4,807,366 - +0.5
4,807,366 - -1.0
4,807,366 - -0.8
4,807,369 - +2.1
4,807,372 - -0.6
4,807,372 - +0.7
4,807,372 - +0.1
4,807,424 + -0.4
4,807,424 + +0.7
4,807,425 - +1.3
4,807,426 + -0.9
4,807,426 + +0.6
4,807,426 + +1.2
4,807,427 - +0.8
4,807,427 - +0.2
4,807,432 - +0.0
4,807,433 + -0.5
4,807,539 + +0.9
4,807,539 + -0.0
4,807,540 - +0.1
4,807,540 - +0.9
4,807,640 - -0.1
4,807,642 - -0.0
4,807,653 + +0.5
4,807,654 - +0.5
4,807,656 + +0.5
4,807,657 - +0.0
4,807,735 - -0.3
4,807,765 + +0.8
4,807,766 - +0.5
4,807,790 - -0.3
4,807,901 + IAI46_22620 0.21 +0.5
4,807,905 - IAI46_22620 0.21 -0.7
4,807,959 - IAI46_22620 0.27 -0.4
4,807,959 - IAI46_22620 0.27 +0.3
4,807,972 + IAI46_22620 0.29 +1.0
4,808,048 - IAI46_22620 0.37 -0.9
4,808,048 - IAI46_22620 0.37 +0.7
4,808,060 + IAI46_22620 0.38 -0.4
4,808,220 - IAI46_22620 0.56 -0.2

Or see this region's nucleotide sequence