Strain Fitness in Serratia liquefaciens MT49 around IAI46_22445

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22440 and IAI46_22445 are separated by 124 nucleotidesIAI46_22445 and IAI46_22450 are separated by 17 nucleotidesIAI46_22450 and IAI46_22455 overlap by 4 nucleotides IAI46_22440: IAI46_22440 - calcium/sodium antiporter, at 4,778,925 to 4,779,911 _22440 IAI46_22445: IAI46_22445 - arabinose-5-phosphate isomerase KdsD, at 4,780,036 to 4,781,022 _22445 IAI46_22450: IAI46_22450 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 4,781,040 to 4,781,594 _22450 IAI46_22455: IAI46_22455 - LPS export ABC transporter periplasmic protein LptC, at 4,781,591 to 4,782,169 _22455 Position (kb) 4780 4781 4782Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4779.047 kb on + strand, within IAI46_22440at 4779.065 kb on - strand, within IAI46_22440at 4779.065 kb on - strand, within IAI46_22440at 4779.121 kb on + strand, within IAI46_22440at 4779.122 kb on - strand, within IAI46_22440at 4779.122 kb on - strand, within IAI46_22440at 4779.125 kb on + strand, within IAI46_22440at 4779.126 kb on - strand, within IAI46_22440at 4779.126 kb on - strand, within IAI46_22440at 4779.126 kb on - strand, within IAI46_22440at 4779.126 kb on - strand, within IAI46_22440at 4779.142 kb on + strand, within IAI46_22440at 4779.142 kb on + strand, within IAI46_22440at 4779.143 kb on - strand, within IAI46_22440at 4779.143 kb on - strand, within IAI46_22440at 4779.143 kb on - strand, within IAI46_22440at 4779.143 kb on - strand, within IAI46_22440at 4779.143 kb on - strand, within IAI46_22440at 4779.143 kb on - strand, within IAI46_22440at 4779.143 kb on - strand, within IAI46_22440at 4779.145 kb on + strand, within IAI46_22440at 4779.146 kb on - strand, within IAI46_22440at 4779.146 kb on - strand, within IAI46_22440at 4779.196 kb on + strand, within IAI46_22440at 4779.197 kb on - strand, within IAI46_22440at 4779.197 kb on - strand, within IAI46_22440at 4779.263 kb on - strand, within IAI46_22440at 4779.263 kb on - strand, within IAI46_22440at 4779.263 kb on - strand, within IAI46_22440at 4779.263 kb on - strand, within IAI46_22440at 4779.338 kb on - strand, within IAI46_22440at 4779.341 kb on + strand, within IAI46_22440at 4779.341 kb on + strand, within IAI46_22440at 4779.342 kb on - strand, within IAI46_22440at 4779.473 kb on + strand, within IAI46_22440at 4779.473 kb on + strand, within IAI46_22440at 4779.532 kb on - strand, within IAI46_22440at 4779.639 kb on - strand, within IAI46_22440at 4779.639 kb on - strand, within IAI46_22440at 4779.653 kb on + strand, within IAI46_22440at 4779.653 kb on + strand, within IAI46_22440at 4779.653 kb on + strand, within IAI46_22440at 4779.654 kb on - strand, within IAI46_22440at 4779.654 kb on - strand, within IAI46_22440at 4779.838 kb on + strandat 4779.838 kb on + strandat 4779.839 kb on - strandat 4779.839 kb on - strandat 4779.841 kb on + strandat 4779.841 kb on + strandat 4779.841 kb on + strandat 4779.841 kb on + strandat 4779.841 kb on + strandat 4779.841 kb on + strandat 4779.852 kb on - strandat 4779.858 kb on + strandat 4779.858 kb on + strandat 4779.859 kb on - strandat 4779.896 kb on + strandat 4779.896 kb on + strandat 4779.896 kb on + strandat 4779.896 kb on + strandat 4779.897 kb on - strandat 4779.897 kb on - strandat 4779.897 kb on - strandat 4779.900 kb on + strandat 4779.901 kb on - strandat 4779.903 kb on - strandat 4779.909 kb on + strandat 4779.909 kb on + strandat 4779.958 kb on + strandat 4779.967 kb on - strandat 4779.967 kb on - strandat 4779.967 kb on - strandat 4779.987 kb on - strandat 4779.998 kb on - strandat 4780.132 kb on + strandat 4780.132 kb on + strandat 4780.209 kb on + strand, within IAI46_22445at 4780.329 kb on + strand, within IAI46_22445at 4780.329 kb on + strand, within IAI46_22445at 4780.330 kb on - strand, within IAI46_22445at 4780.330 kb on - strand, within IAI46_22445at 4780.533 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.661 kb on + strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.662 kb on - strand, within IAI46_22445at 4780.923 kb on + strand, within IAI46_22445at 4780.924 kb on - strandat 4780.985 kb on + strandat 4780.985 kb on + strandat 4780.985 kb on + strandat 4780.985 kb on + strandat 4780.986 kb on - strandat 4780.986 kb on - strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.989 kb on + strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4780.990 kb on - strandat 4781.020 kb on + strandat 4781.020 kb on + strandat 4781.021 kb on - strandat 4781.021 kb on - strandat 4781.024 kb on + strandat 4781.024 kb on + strandat 4781.024 kb on + strandat 4781.061 kb on + strandat 4781.272 kb on + strand, within IAI46_22450at 4781.272 kb on + strand, within IAI46_22450at 4781.360 kb on + strand, within IAI46_22450at 4781.490 kb on + strand, within IAI46_22450

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,779,047 + IAI46_22440 0.12 -0.3
4,779,065 - IAI46_22440 0.14 +0.2
4,779,065 - IAI46_22440 0.14 -0.8
4,779,121 + IAI46_22440 0.20 -0.3
4,779,122 - IAI46_22440 0.20 -0.6
4,779,122 - IAI46_22440 0.20 -0.3
4,779,125 + IAI46_22440 0.20 -0.1
4,779,126 - IAI46_22440 0.20 +0.6
4,779,126 - IAI46_22440 0.20 +0.8
4,779,126 - IAI46_22440 0.20 +1.2
4,779,126 - IAI46_22440 0.20 +0.1
4,779,142 + IAI46_22440 0.22 -0.0
4,779,142 + IAI46_22440 0.22 +0.8
4,779,143 - IAI46_22440 0.22 -0.4
4,779,143 - IAI46_22440 0.22 -0.3
4,779,143 - IAI46_22440 0.22 +0.3
4,779,143 - IAI46_22440 0.22 +0.4
4,779,143 - IAI46_22440 0.22 -0.4
4,779,143 - IAI46_22440 0.22 +0.3
4,779,143 - IAI46_22440 0.22 +0.2
4,779,145 + IAI46_22440 0.22 -0.3
4,779,146 - IAI46_22440 0.22 +0.3
4,779,146 - IAI46_22440 0.22 +0.4
4,779,196 + IAI46_22440 0.27 -1.0
4,779,197 - IAI46_22440 0.28 +0.0
4,779,197 - IAI46_22440 0.28 +0.3
4,779,263 - IAI46_22440 0.34 -0.2
4,779,263 - IAI46_22440 0.34 -0.5
4,779,263 - IAI46_22440 0.34 +0.7
4,779,263 - IAI46_22440 0.34 +0.8
4,779,338 - IAI46_22440 0.42 +0.7
4,779,341 + IAI46_22440 0.42 -1.0
4,779,341 + IAI46_22440 0.42 -1.7
4,779,342 - IAI46_22440 0.42 -0.2
4,779,473 + IAI46_22440 0.56 -0.1
4,779,473 + IAI46_22440 0.56 -0.0
4,779,532 - IAI46_22440 0.61 +1.1
4,779,639 - IAI46_22440 0.72 +0.3
4,779,639 - IAI46_22440 0.72 +0.9
4,779,653 + IAI46_22440 0.74 +0.5
4,779,653 + IAI46_22440 0.74 +0.5
4,779,653 + IAI46_22440 0.74 +2.1
4,779,654 - IAI46_22440 0.74 +0.2
4,779,654 - IAI46_22440 0.74 -2.1
4,779,838 + +0.5
4,779,838 + -0.6
4,779,839 - +0.2
4,779,839 - -0.3
4,779,841 + -0.1
4,779,841 + -0.2
4,779,841 + +0.5
4,779,841 + +0.2
4,779,841 + +0.1
4,779,841 + -0.9
4,779,852 - -0.0
4,779,858 + +0.5
4,779,858 + -0.1
4,779,859 - +0.7
4,779,896 + -0.3
4,779,896 + +0.2
4,779,896 + -0.6
4,779,896 + +0.5
4,779,897 - +0.0
4,779,897 - +0.2
4,779,897 - +1.3
4,779,900 + +0.7
4,779,901 - +0.4
4,779,903 - +2.8
4,779,909 + +0.7
4,779,909 + +0.2
4,779,958 + +0.5
4,779,967 - +0.0
4,779,967 - +0.6
4,779,967 - -0.3
4,779,987 - +0.1
4,779,998 - +0.9
4,780,132 + -0.3
4,780,132 + +0.3
4,780,209 + IAI46_22445 0.18 +0.5
4,780,329 + IAI46_22445 0.30 +0.2
4,780,329 + IAI46_22445 0.30 +0.4
4,780,330 - IAI46_22445 0.30 +0.4
4,780,330 - IAI46_22445 0.30 +1.1
4,780,533 + IAI46_22445 0.50 +0.9
4,780,661 + IAI46_22445 0.63 -0.3
4,780,661 + IAI46_22445 0.63 +0.8
4,780,661 + IAI46_22445 0.63 +0.3
4,780,661 + IAI46_22445 0.63 -0.3
4,780,662 - IAI46_22445 0.63 +0.6
4,780,662 - IAI46_22445 0.63 +0.3
4,780,662 - IAI46_22445 0.63 +1.0
4,780,662 - IAI46_22445 0.63 -0.1
4,780,662 - IAI46_22445 0.63 +0.2
4,780,923 + IAI46_22445 0.90 +0.9
4,780,924 - -1.4
4,780,985 + -0.2
4,780,985 + +0.7
4,780,985 + +0.2
4,780,985 + +0.2
4,780,986 - -1.2
4,780,986 - +0.3
4,780,989 + +1.5
4,780,989 + -0.3
4,780,989 + +0.0
4,780,989 + +0.1
4,780,989 + +0.9
4,780,989 + -0.4
4,780,989 + +0.8
4,780,989 + +0.9
4,780,989 + +1.3
4,780,989 + +0.1
4,780,989 + +0.1
4,780,990 - -0.8
4,780,990 - -1.6
4,780,990 - -1.8
4,780,990 - +1.5
4,780,990 - -0.2
4,780,990 - -0.8
4,780,990 - -1.7
4,781,020 + +0.4
4,781,020 + +1.1
4,781,021 - -0.3
4,781,021 - +0.2
4,781,024 + -0.3
4,781,024 + +0.1
4,781,024 + +0.1
4,781,061 + +0.4
4,781,272 + IAI46_22450 0.42 -2.1
4,781,272 + IAI46_22450 0.42 -0.5
4,781,360 + IAI46_22450 0.58 -0.9
4,781,490 + IAI46_22450 0.81 -0.1

Or see this region's nucleotide sequence