Strain Fitness in Serratia liquefaciens MT49 around IAI46_21700

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21695 and IAI46_21700 are separated by 36 nucleotidesIAI46_21700 and IAI46_21705 are separated by 50 nucleotidesIAI46_21705 and IAI46_21710 overlap by 1 nucleotidesIAI46_21710 and IAI46_21715 are separated by 138 nucleotides IAI46_21695: IAI46_21695 - LacI family DNA-binding transcriptional regulator, at 4,614,223 to 4,615,266 _21695 IAI46_21700: IAI46_21700 - shikimate 5-dehydrogenase, at 4,615,303 to 4,616,121 _21700 IAI46_21705: IAI46_21705 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,616,172 to 4,616,465 _21705 IAI46_21710: IAI46_21710 - type II toxin-antitoxin system ParD family antitoxin, at 4,616,465 to 4,616,725 _21710 IAI46_21715: IAI46_21715 - TonB system transport protein ExbD, at 4,616,864 to 4,617,286 _21715 Position (kb) 4615 4616 4617Strain fitness (log2 ratio) -2 -1 0 1at 4614.312 kb on + strandat 4614.313 kb on - strandat 4614.331 kb on + strand, within IAI46_21695at 4614.389 kb on - strand, within IAI46_21695at 4614.435 kb on + strand, within IAI46_21695at 4614.436 kb on - strand, within IAI46_21695at 4614.436 kb on - strand, within IAI46_21695at 4614.469 kb on + strand, within IAI46_21695at 4614.544 kb on - strand, within IAI46_21695at 4614.747 kb on + strand, within IAI46_21695at 4614.790 kb on + strand, within IAI46_21695at 4614.790 kb on + strand, within IAI46_21695at 4614.791 kb on - strand, within IAI46_21695at 4614.908 kb on - strand, within IAI46_21695at 4614.908 kb on - strand, within IAI46_21695at 4614.925 kb on + strand, within IAI46_21695at 4614.977 kb on + strand, within IAI46_21695at 4614.982 kb on - strand, within IAI46_21695at 4614.982 kb on - strand, within IAI46_21695at 4614.982 kb on - strand, within IAI46_21695at 4615.018 kb on + strand, within IAI46_21695at 4615.078 kb on + strand, within IAI46_21695at 4615.078 kb on + strand, within IAI46_21695at 4615.317 kb on + strandat 4615.383 kb on + strandat 4615.383 kb on + strandat 4615.383 kb on + strandat 4615.384 kb on - strandat 4615.384 kb on - strandat 4615.387 kb on + strand, within IAI46_21700at 4615.387 kb on + strand, within IAI46_21700at 4615.387 kb on + strand, within IAI46_21700at 4615.387 kb on + strand, within IAI46_21700at 4615.388 kb on - strand, within IAI46_21700at 4615.388 kb on - strand, within IAI46_21700at 4615.388 kb on - strand, within IAI46_21700at 4615.388 kb on - strand, within IAI46_21700at 4615.388 kb on - strand, within IAI46_21700at 4615.394 kb on - strand, within IAI46_21700at 4615.417 kb on - strand, within IAI46_21700at 4615.420 kb on + strand, within IAI46_21700at 4615.609 kb on + strand, within IAI46_21700at 4615.609 kb on + strand, within IAI46_21700at 4615.610 kb on - strand, within IAI46_21700at 4615.611 kb on + strand, within IAI46_21700at 4615.612 kb on - strand, within IAI46_21700at 4615.612 kb on - strand, within IAI46_21700at 4615.621 kb on + strand, within IAI46_21700at 4615.621 kb on + strand, within IAI46_21700at 4615.622 kb on - strand, within IAI46_21700at 4615.622 kb on - strand, within IAI46_21700at 4615.698 kb on + strand, within IAI46_21700at 4615.698 kb on + strand, within IAI46_21700at 4615.752 kb on + strand, within IAI46_21700at 4615.799 kb on - strand, within IAI46_21700at 4615.799 kb on - strand, within IAI46_21700at 4615.833 kb on - strand, within IAI46_21700at 4615.856 kb on + strand, within IAI46_21700at 4615.857 kb on - strand, within IAI46_21700at 4616.060 kb on - strandat 4616.069 kb on + strandat 4616.070 kb on - strandat 4616.076 kb on + strandat 4616.199 kb on - strandat 4616.218 kb on - strand, within IAI46_21705at 4616.237 kb on + strand, within IAI46_21705at 4616.237 kb on + strand, within IAI46_21705at 4616.238 kb on - strand, within IAI46_21705at 4616.244 kb on + strand, within IAI46_21705at 4616.244 kb on + strand, within IAI46_21705at 4616.245 kb on - strand, within IAI46_21705at 4616.262 kb on + strand, within IAI46_21705at 4616.266 kb on + strand, within IAI46_21705at 4616.266 kb on + strand, within IAI46_21705at 4616.267 kb on - strand, within IAI46_21705at 4616.267 kb on - strand, within IAI46_21705at 4616.320 kb on + strand, within IAI46_21705at 4616.357 kb on + strand, within IAI46_21705at 4616.357 kb on + strand, within IAI46_21705at 4616.357 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.360 kb on - strand, within IAI46_21705at 4616.373 kb on - strand, within IAI46_21705at 4616.408 kb on + strand, within IAI46_21705at 4616.409 kb on - strand, within IAI46_21705at 4616.435 kb on - strand, within IAI46_21705at 4616.435 kb on - strand, within IAI46_21705at 4616.496 kb on + strand, within IAI46_21710at 4616.496 kb on + strand, within IAI46_21710at 4616.561 kb on + strand, within IAI46_21710at 4616.633 kb on + strand, within IAI46_21710at 4616.705 kb on + strandat 4616.716 kb on + strandat 4616.752 kb on + strandat 4616.760 kb on - strandat 4616.762 kb on + strandat 4616.800 kb on - strandat 4616.816 kb on - strandat 4616.917 kb on + strand, within IAI46_21715at 4616.927 kb on - strand, within IAI46_21715at 4616.933 kb on + strand, within IAI46_21715at 4616.933 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.064 kb on - strand, within IAI46_21715

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,614,312 + +0.7
4,614,313 - -1.0
4,614,331 + IAI46_21695 0.10 +0.7
4,614,389 - IAI46_21695 0.16 +0.5
4,614,435 + IAI46_21695 0.20 +1.6
4,614,436 - IAI46_21695 0.20 +0.2
4,614,436 - IAI46_21695 0.20 +0.1
4,614,469 + IAI46_21695 0.24 +1.2
4,614,544 - IAI46_21695 0.31 -0.7
4,614,747 + IAI46_21695 0.50 +0.5
4,614,790 + IAI46_21695 0.54 -0.8
4,614,790 + IAI46_21695 0.54 -0.2
4,614,791 - IAI46_21695 0.54 -0.4
4,614,908 - IAI46_21695 0.66 -0.4
4,614,908 - IAI46_21695 0.66 -1.2
4,614,925 + IAI46_21695 0.67 -0.5
4,614,977 + IAI46_21695 0.72 +0.3
4,614,982 - IAI46_21695 0.73 -1.5
4,614,982 - IAI46_21695 0.73 -0.1
4,614,982 - IAI46_21695 0.73 -0.4
4,615,018 + IAI46_21695 0.76 +0.3
4,615,078 + IAI46_21695 0.82 +0.1
4,615,078 + IAI46_21695 0.82 -0.4
4,615,317 + +1.6
4,615,383 + -2.4
4,615,383 + +0.2
4,615,383 + -0.9
4,615,384 - +0.2
4,615,384 - -0.5
4,615,387 + IAI46_21700 0.10 +0.7
4,615,387 + IAI46_21700 0.10 -0.4
4,615,387 + IAI46_21700 0.10 -0.5
4,615,387 + IAI46_21700 0.10 +0.0
4,615,388 - IAI46_21700 0.10 +0.5
4,615,388 - IAI46_21700 0.10 +0.1
4,615,388 - IAI46_21700 0.10 -0.8
4,615,388 - IAI46_21700 0.10 +0.5
4,615,388 - IAI46_21700 0.10 +0.0
4,615,394 - IAI46_21700 0.11 +0.7
4,615,417 - IAI46_21700 0.14 +0.5
4,615,420 + IAI46_21700 0.14 +0.4
4,615,609 + IAI46_21700 0.37 +0.3
4,615,609 + IAI46_21700 0.37 -0.2
4,615,610 - IAI46_21700 0.37 -0.8
4,615,611 + IAI46_21700 0.38 +1.1
4,615,612 - IAI46_21700 0.38 +0.5
4,615,612 - IAI46_21700 0.38 +0.1
4,615,621 + IAI46_21700 0.39 -0.5
4,615,621 + IAI46_21700 0.39 -0.5
4,615,622 - IAI46_21700 0.39 -0.1
4,615,622 - IAI46_21700 0.39 +0.6
4,615,698 + IAI46_21700 0.48 +0.5
4,615,698 + IAI46_21700 0.48 -1.1
4,615,752 + IAI46_21700 0.55 +1.3
4,615,799 - IAI46_21700 0.61 -0.4
4,615,799 - IAI46_21700 0.61 -0.1
4,615,833 - IAI46_21700 0.65 -0.2
4,615,856 + IAI46_21700 0.68 -0.6
4,615,857 - IAI46_21700 0.68 -0.2
4,616,060 - +1.0
4,616,069 + +0.5
4,616,070 - -0.1
4,616,076 + -0.6
4,616,199 - +1.2
4,616,218 - IAI46_21705 0.16 -0.3
4,616,237 + IAI46_21705 0.22 +0.3
4,616,237 + IAI46_21705 0.22 +0.5
4,616,238 - IAI46_21705 0.22 +1.2
4,616,244 + IAI46_21705 0.24 -0.3
4,616,244 + IAI46_21705 0.24 -0.8
4,616,245 - IAI46_21705 0.25 +0.2
4,616,262 + IAI46_21705 0.31 +0.1
4,616,266 + IAI46_21705 0.32 -0.8
4,616,266 + IAI46_21705 0.32 +0.8
4,616,267 - IAI46_21705 0.32 +0.4
4,616,267 - IAI46_21705 0.32 +1.0
4,616,320 + IAI46_21705 0.50 -1.3
4,616,357 + IAI46_21705 0.63 -0.2
4,616,357 + IAI46_21705 0.63 -0.5
4,616,357 + IAI46_21705 0.63 +0.8
4,616,359 + IAI46_21705 0.64 +0.3
4,616,359 + IAI46_21705 0.64 +0.9
4,616,359 + IAI46_21705 0.64 +0.7
4,616,359 + IAI46_21705 0.64 +0.0
4,616,359 + IAI46_21705 0.64 -0.4
4,616,360 - IAI46_21705 0.64 -0.7
4,616,373 - IAI46_21705 0.68 -0.1
4,616,408 + IAI46_21705 0.80 +0.1
4,616,409 - IAI46_21705 0.81 -0.4
4,616,435 - IAI46_21705 0.89 +0.4
4,616,435 - IAI46_21705 0.89 +0.7
4,616,496 + IAI46_21710 0.12 +0.9
4,616,496 + IAI46_21710 0.12 +0.5
4,616,561 + IAI46_21710 0.37 +0.0
4,616,633 + IAI46_21710 0.64 -0.6
4,616,705 + -0.0
4,616,716 + +0.0
4,616,752 + -1.2
4,616,760 - +0.3
4,616,762 + +0.2
4,616,800 - +0.8
4,616,816 - +0.1
4,616,917 + IAI46_21715 0.13 +0.0
4,616,927 - IAI46_21715 0.15 -0.5
4,616,933 + IAI46_21715 0.16 +0.9
4,616,933 + IAI46_21715 0.16 +0.8
4,617,063 + IAI46_21715 0.47 +0.6
4,617,063 + IAI46_21715 0.47 -1.5
4,617,063 + IAI46_21715 0.47 -0.1
4,617,063 + IAI46_21715 0.47 -0.7
4,617,064 - IAI46_21715 0.47 -0.3

Or see this region's nucleotide sequence