Strain Fitness in Serratia liquefaciens MT49 around IAI46_20910

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20905 and IAI46_20910 are separated by 202 nucleotidesIAI46_20910 and IAI46_20915 are separated by 331 nucleotides IAI46_20905: IAI46_20905 - ribose-5-phosphate isomerase RpiA, at 4,424,891 to 4,425,547 _20905 IAI46_20910: IAI46_20910 - LysR family transcriptional regulator ArgP, at 4,425,750 to 4,426,643 _20910 IAI46_20915: IAI46_20915 - oxidative stress defense protein, at 4,426,975 to 4,427,706 _20915 Position (kb) 4425 4426 4427Strain fitness (log2 ratio) -2 -1 0 1 2at 4424.750 kb on + strandat 4424.751 kb on - strandat 4424.751 kb on - strandat 4424.751 kb on - strandat 4424.769 kb on + strandat 4424.769 kb on + strandat 4424.770 kb on - strandat 4424.770 kb on - strandat 4424.846 kb on + strandat 4424.847 kb on - strandat 4424.879 kb on + strandat 4425.548 kb on - strandat 4425.548 kb on - strandat 4425.551 kb on - strandat 4425.551 kb on - strandat 4425.583 kb on + strandat 4425.583 kb on + strandat 4425.584 kb on - strandat 4425.584 kb on - strandat 4425.584 kb on - strandat 4425.584 kb on - strandat 4425.587 kb on - strandat 4425.587 kb on - strandat 4425.588 kb on + strandat 4425.588 kb on + strandat 4425.589 kb on - strandat 4425.593 kb on + strandat 4425.637 kb on + strandat 4425.691 kb on + strandat 4425.712 kb on + strandat 4425.713 kb on - strandat 4425.713 kb on - strandat 4425.721 kb on + strandat 4425.721 kb on + strandat 4425.721 kb on + strandat 4425.721 kb on + strandat 4425.722 kb on - strandat 4425.722 kb on - strandat 4425.722 kb on - strandat 4425.722 kb on - strandat 4425.722 kb on - strandat 4425.725 kb on + strandat 4425.725 kb on + strandat 4425.725 kb on + strandat 4425.725 kb on + strandat 4425.726 kb on - strandat 4425.728 kb on + strandat 4425.733 kb on + strandat 4425.733 kb on + strandat 4425.734 kb on - strandat 4425.765 kb on + strandat 4425.836 kb on + strandat 4425.836 kb on + strandat 4425.837 kb on - strandat 4425.837 kb on - strandat 4425.866 kb on + strand, within IAI46_20910at 4425.867 kb on - strand, within IAI46_20910at 4425.867 kb on - strand, within IAI46_20910at 4425.913 kb on + strand, within IAI46_20910at 4426.079 kb on - strand, within IAI46_20910at 4426.139 kb on + strand, within IAI46_20910at 4426.216 kb on + strand, within IAI46_20910at 4426.239 kb on + strand, within IAI46_20910at 4426.239 kb on + strand, within IAI46_20910at 4426.463 kb on + strand, within IAI46_20910at 4426.464 kb on - strand, within IAI46_20910at 4426.464 kb on - strand, within IAI46_20910at 4426.464 kb on - strand, within IAI46_20910at 4426.511 kb on + strand, within IAI46_20910at 4426.678 kb on + strandat 4426.695 kb on + strandat 4426.736 kb on - strandat 4426.736 kb on - strandat 4426.752 kb on + strandat 4426.797 kb on + strandat 4426.808 kb on - strandat 4426.832 kb on + strandat 4426.832 kb on + strandat 4426.832 kb on + strandat 4426.833 kb on - strandat 4426.835 kb on - strandat 4426.835 kb on - strandat 4426.839 kb on + strandat 4426.839 kb on + strandat 4426.839 kb on + strandat 4426.840 kb on - strandat 4426.840 kb on - strandat 4426.840 kb on - strandat 4426.927 kb on - strandat 4426.971 kb on + strandat 4426.976 kb on + strandat 4426.976 kb on + strandat 4426.977 kb on - strandat 4426.977 kb on - strandat 4427.008 kb on + strandat 4427.009 kb on - strandat 4427.048 kb on + strandat 4427.049 kb on - strand, within IAI46_20915at 4427.094 kb on - strand, within IAI46_20915at 4427.094 kb on - strand, within IAI46_20915at 4427.121 kb on - strand, within IAI46_20915at 4427.121 kb on - strand, within IAI46_20915at 4427.328 kb on + strand, within IAI46_20915at 4427.347 kb on + strand, within IAI46_20915at 4427.348 kb on - strand, within IAI46_20915

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,424,750 + -0.7
4,424,751 - -2.4
4,424,751 - -1.0
4,424,751 - -2.0
4,424,769 + -1.0
4,424,769 + +0.5
4,424,770 - -0.4
4,424,770 - -0.8
4,424,846 + +0.6
4,424,847 - -1.8
4,424,879 + +1.3
4,425,548 - -1.9
4,425,548 - -0.3
4,425,551 - +0.3
4,425,551 - -1.7
4,425,583 + +1.3
4,425,583 + -0.2
4,425,584 - +0.3
4,425,584 - +1.3
4,425,584 - -0.2
4,425,584 - +0.4
4,425,587 - -0.2
4,425,587 - -1.4
4,425,588 + -0.9
4,425,588 + +0.1
4,425,589 - +0.3
4,425,593 + -0.0
4,425,637 + -0.9
4,425,691 + +0.1
4,425,712 + -0.1
4,425,713 - +0.5
4,425,713 - +0.7
4,425,721 + -0.2
4,425,721 + +1.5
4,425,721 + -1.5
4,425,721 + -0.3
4,425,722 - -0.4
4,425,722 - +0.9
4,425,722 - +0.3
4,425,722 - +0.2
4,425,722 - +1.3
4,425,725 + -0.3
4,425,725 + +0.5
4,425,725 + +0.4
4,425,725 + +0.3
4,425,726 - +0.2
4,425,728 + +1.9
4,425,733 + -0.5
4,425,733 + -0.1
4,425,734 - +0.8
4,425,765 + +0.1
4,425,836 + +0.3
4,425,836 + -0.0
4,425,837 - +1.5
4,425,837 - +0.4
4,425,866 + IAI46_20910 0.13 +1.0
4,425,867 - IAI46_20910 0.13 -0.8
4,425,867 - IAI46_20910 0.13 +0.4
4,425,913 + IAI46_20910 0.18 +0.4
4,426,079 - IAI46_20910 0.37 -0.8
4,426,139 + IAI46_20910 0.44 +0.4
4,426,216 + IAI46_20910 0.52 +1.1
4,426,239 + IAI46_20910 0.55 -0.2
4,426,239 + IAI46_20910 0.55 +1.3
4,426,463 + IAI46_20910 0.80 -0.1
4,426,464 - IAI46_20910 0.80 -0.1
4,426,464 - IAI46_20910 0.80 +0.3
4,426,464 - IAI46_20910 0.80 +0.8
4,426,511 + IAI46_20910 0.85 -0.2
4,426,678 + +0.4
4,426,695 + +0.7
4,426,736 - +0.2
4,426,736 - +0.1
4,426,752 + +0.1
4,426,797 + +0.5
4,426,808 - -0.3
4,426,832 + -1.6
4,426,832 + -1.1
4,426,832 + -0.8
4,426,833 - +0.3
4,426,835 - +0.4
4,426,835 - +0.2
4,426,839 + +0.6
4,426,839 + +0.6
4,426,839 + -0.9
4,426,840 - +0.4
4,426,840 - -0.4
4,426,840 - +0.7
4,426,927 - +0.6
4,426,971 + +0.2
4,426,976 + +1.0
4,426,976 + +0.8
4,426,977 - +0.3
4,426,977 - -0.2
4,427,008 + +0.0
4,427,009 - -0.4
4,427,048 + +0.1
4,427,049 - IAI46_20915 0.10 +0.8
4,427,094 - IAI46_20915 0.16 -0.8
4,427,094 - IAI46_20915 0.16 -1.0
4,427,121 - IAI46_20915 0.20 -0.0
4,427,121 - IAI46_20915 0.20 -0.5
4,427,328 + IAI46_20915 0.48 -0.1
4,427,347 + IAI46_20915 0.51 +0.6
4,427,348 - IAI46_20915 0.51 +1.0

Or see this region's nucleotide sequence