Strain Fitness in Serratia liquefaciens MT49 around IAI46_20305

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20300 and IAI46_20305 are separated by 152 nucleotidesIAI46_20305 and IAI46_20310 are separated by 178 nucleotides IAI46_20300: IAI46_20300 - alpha-2-macroglobulin, at 4,284,685 to 4,290,666 _20300 IAI46_20305: IAI46_20305 - YqcC family protein, at 4,290,819 to 4,291,145 _20305 IAI46_20310: IAI46_20310 - MFS transporter, at 4,291,324 to 4,292,562 _20310 Position (kb) 4290 4291 4292Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4289.840 kb on + strand, within IAI46_20300at 4289.856 kb on + strand, within IAI46_20300at 4289.993 kb on + strand, within IAI46_20300at 4290.021 kb on + strand, within IAI46_20300at 4290.037 kb on - strand, within IAI46_20300at 4290.052 kb on - strand, within IAI46_20300at 4290.107 kb on + strandat 4290.141 kb on + strandat 4290.142 kb on - strandat 4290.195 kb on + strandat 4290.196 kb on - strandat 4290.222 kb on + strandat 4290.222 kb on + strandat 4290.269 kb on - strandat 4290.304 kb on + strandat 4290.305 kb on - strandat 4290.305 kb on - strandat 4290.344 kb on + strandat 4290.345 kb on - strandat 4290.401 kb on + strandat 4290.401 kb on + strandat 4290.420 kb on + strandat 4290.630 kb on + strandat 4290.630 kb on + strandat 4290.648 kb on + strandat 4290.667 kb on + strandat 4290.683 kb on - strandat 4290.704 kb on + strandat 4290.746 kb on - strandat 4290.746 kb on - strandat 4290.767 kb on + strandat 4290.770 kb on + strandat 4290.771 kb on - strandat 4290.771 kb on - strandat 4290.771 kb on - strandat 4290.771 kb on - strandat 4290.815 kb on - strandat 4290.816 kb on + strandat 4290.820 kb on + strandat 4290.821 kb on - strandat 4290.890 kb on + strand, within IAI46_20305at 4290.891 kb on - strand, within IAI46_20305at 4290.891 kb on - strand, within IAI46_20305at 4290.891 kb on - strand, within IAI46_20305at 4290.968 kb on - strand, within IAI46_20305at 4290.971 kb on + strand, within IAI46_20305at 4290.972 kb on - strand, within IAI46_20305at 4291.134 kb on - strandat 4291.134 kb on - strandat 4291.138 kb on - strandat 4291.138 kb on - strandat 4291.209 kb on - strandat 4291.209 kb on - strandat 4291.217 kb on + strandat 4291.244 kb on - strandat 4291.244 kb on - strandat 4291.244 kb on - strandat 4291.244 kb on - strandat 4291.244 kb on - strandat 4291.258 kb on + strandat 4291.290 kb on + strandat 4291.290 kb on + strandat 4291.291 kb on - strandat 4291.291 kb on - strandat 4291.291 kb on - strandat 4291.317 kb on + strandat 4291.317 kb on + strandat 4291.317 kb on + strandat 4291.318 kb on - strandat 4291.449 kb on + strand, within IAI46_20310at 4291.630 kb on + strand, within IAI46_20310at 4291.654 kb on - strand, within IAI46_20310at 4291.751 kb on - strand, within IAI46_20310at 4291.953 kb on + strand, within IAI46_20310at 4291.954 kb on - strand, within IAI46_20310at 4292.036 kb on - strand, within IAI46_20310at 4292.066 kb on - strand, within IAI46_20310at 4292.066 kb on - strand, within IAI46_20310at 4292.066 kb on - strand, within IAI46_20310at 4292.066 kb on - strand, within IAI46_20310

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,289,840 + IAI46_20300 0.86 -0.1
4,289,856 + IAI46_20300 0.86 +1.0
4,289,993 + IAI46_20300 0.89 +0.8
4,290,021 + IAI46_20300 0.89 +0.1
4,290,037 - IAI46_20300 0.89 +1.1
4,290,052 - IAI46_20300 0.90 +0.2
4,290,107 + +0.5
4,290,141 + +0.0
4,290,142 - +0.1
4,290,195 + -0.8
4,290,196 - -0.5
4,290,222 + +1.4
4,290,222 + +0.1
4,290,269 - -0.0
4,290,304 + -0.0
4,290,305 - +0.2
4,290,305 - +2.8
4,290,344 + +0.2
4,290,345 - +0.8
4,290,401 + -0.7
4,290,401 + -0.9
4,290,420 + +0.7
4,290,630 + -0.2
4,290,630 + -0.8
4,290,648 + +0.8
4,290,667 + +0.5
4,290,683 - -0.2
4,290,704 + -0.0
4,290,746 - +0.2
4,290,746 - +0.6
4,290,767 + +1.3
4,290,770 + +0.2
4,290,771 - +0.1
4,290,771 - +0.0
4,290,771 - -0.8
4,290,771 - -0.6
4,290,815 - +0.9
4,290,816 + -0.4
4,290,820 + +0.1
4,290,821 - +0.4
4,290,890 + IAI46_20305 0.22 -0.1
4,290,891 - IAI46_20305 0.22 +0.2
4,290,891 - IAI46_20305 0.22 -0.0
4,290,891 - IAI46_20305 0.22 +0.0
4,290,968 - IAI46_20305 0.46 -0.3
4,290,971 + IAI46_20305 0.46 -0.1
4,290,972 - IAI46_20305 0.47 -0.8
4,291,134 - -0.3
4,291,134 - -0.6
4,291,138 - -2.3
4,291,138 - -1.8
4,291,209 - +0.5
4,291,209 - +0.1
4,291,217 + -0.1
4,291,244 - +0.0
4,291,244 - +0.9
4,291,244 - +0.3
4,291,244 - -0.1
4,291,244 - +0.3
4,291,258 + +2.6
4,291,290 + +0.1
4,291,290 + -0.9
4,291,291 - +0.2
4,291,291 - +0.5
4,291,291 - -0.0
4,291,317 + +0.4
4,291,317 + +0.6
4,291,317 + +0.2
4,291,318 - -0.7
4,291,449 + IAI46_20310 0.10 +1.2
4,291,630 + IAI46_20310 0.25 +0.4
4,291,654 - IAI46_20310 0.27 -1.3
4,291,751 - IAI46_20310 0.34 +0.1
4,291,953 + IAI46_20310 0.51 -0.0
4,291,954 - IAI46_20310 0.51 -0.2
4,292,036 - IAI46_20310 0.57 -0.4
4,292,066 - IAI46_20310 0.60 -0.5
4,292,066 - IAI46_20310 0.60 +0.2
4,292,066 - IAI46_20310 0.60 +0.9
4,292,066 - IAI46_20310 0.60 +0.2

Or see this region's nucleotide sequence