Strain Fitness in Serratia liquefaciens MT49 around IAI46_20015

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20010 and IAI46_20015 are separated by 208 nucleotidesIAI46_20015 and IAI46_20020 are separated by 119 nucleotidesIAI46_20020 and IAI46_20025 are separated by 169 nucleotides IAI46_20010: IAI46_20010 - tRNA/rRNA methyltransferase, at 4,219,719 to 4,220,819 _20010 IAI46_20015: IAI46_20015 - thioredoxin TrxC, at 4,221,028 to 4,221,447 _20015 IAI46_20020: IAI46_20020 - DTW domain-containing protein, at 4,221,567 to 4,222,262 _20020 IAI46_20025: IAI46_20025 - bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase, at 4,222,432 to 4,225,080 _20025 Position (kb) 4221 4222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4220.034 kb on - strand, within IAI46_20010at 4220.236 kb on - strand, within IAI46_20010at 4220.236 kb on - strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.287 kb on - strand, within IAI46_20010at 4220.287 kb on - strand, within IAI46_20010at 4220.287 kb on - strand, within IAI46_20010at 4220.297 kb on - strand, within IAI46_20010at 4220.558 kb on - strand, within IAI46_20010at 4220.558 kb on - strand, within IAI46_20010at 4220.726 kb on + strandat 4220.727 kb on - strandat 4220.773 kb on + strandat 4220.774 kb on - strandat 4220.774 kb on - strandat 4220.774 kb on - strandat 4220.804 kb on + strandat 4220.854 kb on - strandat 4220.871 kb on + strandat 4220.871 kb on + strandat 4220.871 kb on + strandat 4220.872 kb on - strandat 4220.872 kb on - strandat 4220.872 kb on - strandat 4220.872 kb on - strandat 4220.872 kb on - strandat 4220.880 kb on + strandat 4220.880 kb on + strandat 4220.881 kb on - strandat 4220.890 kb on - strandat 4220.896 kb on + strandat 4220.897 kb on - strandat 4220.897 kb on - strandat 4220.897 kb on - strandat 4220.903 kb on + strandat 4220.903 kb on + strandat 4220.903 kb on + strandat 4220.904 kb on - strandat 4220.904 kb on - strandat 4220.908 kb on + strandat 4220.953 kb on + strandat 4220.954 kb on - strandat 4220.956 kb on + strandat 4220.956 kb on + strandat 4220.957 kb on - strandat 4220.957 kb on - strandat 4220.966 kb on + strandat 4220.967 kb on - strandat 4220.972 kb on + strandat 4220.973 kb on - strandat 4220.973 kb on - strandat 4220.996 kb on + strandat 4221.034 kb on - strandat 4221.034 kb on - strandat 4221.051 kb on + strandat 4221.051 kb on + strandat 4221.052 kb on - strandat 4221.052 kb on - strandat 4221.052 kb on - strandat 4221.290 kb on + strand, within IAI46_20015at 4221.357 kb on + strand, within IAI46_20015at 4221.357 kb on + strand, within IAI46_20015at 4221.358 kb on - strand, within IAI46_20015at 4221.423 kb on + strandat 4221.440 kb on + strandat 4221.441 kb on - strandat 4221.539 kb on - strandat 4221.539 kb on - strandat 4221.583 kb on + strandat 4221.584 kb on - strandat 4221.651 kb on - strand, within IAI46_20020at 4221.702 kb on - strand, within IAI46_20020at 4221.702 kb on - strand, within IAI46_20020at 4221.773 kb on + strand, within IAI46_20020at 4221.795 kb on - strand, within IAI46_20020at 4221.863 kb on + strand, within IAI46_20020at 4221.864 kb on - strand, within IAI46_20020at 4221.885 kb on + strand, within IAI46_20020at 4221.885 kb on + strand, within IAI46_20020at 4221.885 kb on + strand, within IAI46_20020at 4221.886 kb on - strand, within IAI46_20020at 4221.886 kb on - strand, within IAI46_20020at 4221.906 kb on + strand, within IAI46_20020at 4221.972 kb on - strand, within IAI46_20020at 4222.023 kb on + strand, within IAI46_20020at 4222.023 kb on + strand, within IAI46_20020at 4222.074 kb on + strand, within IAI46_20020at 4222.074 kb on + strand, within IAI46_20020at 4222.206 kb on + strandat 4222.206 kb on + strandat 4222.224 kb on - strandat 4222.261 kb on - strandat 4222.293 kb on + strandat 4222.293 kb on + strandat 4222.295 kb on + strandat 4222.302 kb on + strandat 4222.302 kb on + strandat 4222.303 kb on - strandat 4222.303 kb on - strandat 4222.321 kb on - strandat 4222.351 kb on + strandat 4222.351 kb on + strandat 4222.351 kb on + strandat 4222.352 kb on - strandat 4222.352 kb on - strandat 4222.355 kb on + strandat 4222.359 kb on + strandat 4222.359 kb on + strandat 4222.360 kb on - strandat 4222.360 kb on - strandat 4222.360 kb on - strandat 4222.360 kb on - strandat 4222.416 kb on + strandat 4222.417 kb on - strandat 4222.418 kb on + strandat 4222.418 kb on + strandat 4222.418 kb on + strandat 4222.418 kb on + strandat 4222.419 kb on - strandat 4222.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,220,034 - IAI46_20010 0.29 +1.5
4,220,236 - IAI46_20010 0.47 -0.2
4,220,236 - IAI46_20010 0.47 +1.2
4,220,286 + IAI46_20010 0.51 -0.9
4,220,286 + IAI46_20010 0.51 -1.7
4,220,286 + IAI46_20010 0.51 -1.1
4,220,286 + IAI46_20010 0.51 +0.2
4,220,287 - IAI46_20010 0.52 +0.1
4,220,287 - IAI46_20010 0.52 -0.6
4,220,287 - IAI46_20010 0.52 +0.5
4,220,297 - IAI46_20010 0.52 +0.2
4,220,558 - IAI46_20010 0.76 +0.5
4,220,558 - IAI46_20010 0.76 -0.2
4,220,726 + +0.4
4,220,727 - +0.0
4,220,773 + -0.8
4,220,774 - -0.5
4,220,774 - +0.2
4,220,774 - +0.3
4,220,804 + -0.2
4,220,854 - +0.6
4,220,871 + +0.6
4,220,871 + +0.3
4,220,871 + +0.3
4,220,872 - -0.1
4,220,872 - -0.0
4,220,872 - +0.8
4,220,872 - +0.0
4,220,872 - +0.7
4,220,880 + +0.8
4,220,880 + +0.4
4,220,881 - -0.1
4,220,890 - -0.8
4,220,896 + +0.5
4,220,897 - +0.3
4,220,897 - +1.1
4,220,897 - +0.6
4,220,903 + +1.3
4,220,903 + +0.2
4,220,903 + -2.0
4,220,904 - -0.4
4,220,904 - +1.2
4,220,908 + +0.7
4,220,953 + -1.1
4,220,954 - +0.2
4,220,956 + +0.9
4,220,956 + +0.0
4,220,957 - +0.3
4,220,957 - +1.0
4,220,966 + -0.6
4,220,967 - -0.1
4,220,972 + -0.8
4,220,973 - +0.0
4,220,973 - +0.2
4,220,996 + +0.3
4,221,034 - -0.3
4,221,034 - +0.5
4,221,051 + -1.0
4,221,051 + +1.5
4,221,052 - +0.8
4,221,052 - +0.5
4,221,052 - -0.1
4,221,290 + IAI46_20015 0.62 +1.2
4,221,357 + IAI46_20015 0.78 +0.5
4,221,357 + IAI46_20015 0.78 +0.9
4,221,358 - IAI46_20015 0.79 -0.7
4,221,423 + +1.0
4,221,440 + -0.1
4,221,441 - +0.1
4,221,539 - +0.6
4,221,539 - -0.1
4,221,583 + +0.1
4,221,584 - -0.5
4,221,651 - IAI46_20020 0.12 -0.2
4,221,702 - IAI46_20020 0.19 +0.3
4,221,702 - IAI46_20020 0.19 +0.1
4,221,773 + IAI46_20020 0.30 +1.2
4,221,795 - IAI46_20020 0.33 +0.2
4,221,863 + IAI46_20020 0.43 +0.5
4,221,864 - IAI46_20020 0.43 +1.7
4,221,885 + IAI46_20020 0.46 +0.2
4,221,885 + IAI46_20020 0.46 -0.7
4,221,885 + IAI46_20020 0.46 -0.0
4,221,886 - IAI46_20020 0.46 -1.7
4,221,886 - IAI46_20020 0.46 -1.4
4,221,906 + IAI46_20020 0.49 -0.3
4,221,972 - IAI46_20020 0.58 +0.2
4,222,023 + IAI46_20020 0.66 +0.6
4,222,023 + IAI46_20020 0.66 -0.7
4,222,074 + IAI46_20020 0.73 -0.8
4,222,074 + IAI46_20020 0.73 -0.7
4,222,206 + -0.1
4,222,206 + +0.3
4,222,224 - +0.2
4,222,261 - +0.2
4,222,293 + +0.4
4,222,293 + +1.1
4,222,295 + +0.1
4,222,302 + +1.1
4,222,302 + -3.2
4,222,303 - +1.2
4,222,303 - +0.0
4,222,321 - +0.6
4,222,351 + +0.6
4,222,351 + +0.3
4,222,351 + -0.1
4,222,352 - +1.4
4,222,352 - +0.8
4,222,355 + +0.2
4,222,359 + +0.2
4,222,359 + +1.0
4,222,360 - -0.1
4,222,360 - +2.5
4,222,360 - -0.9
4,222,360 - +0.2
4,222,416 + +0.9
4,222,417 - +0.3
4,222,418 + +0.1
4,222,418 + +0.5
4,222,418 + +0.6
4,222,418 + +0.7
4,222,419 - -1.2
4,222,419 - +0.0

Or see this region's nucleotide sequence