Strain Fitness in Serratia liquefaciens MT49 around IAI46_19385

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19375 and IAI46_19380 overlap by 10 nucleotidesIAI46_19380 and IAI46_19385 are separated by 144 nucleotidesIAI46_19385 and IAI46_19390 overlap by 4 nucleotides IAI46_19375: IAI46_19375 - nickel/cobalt transporter, at 4,087,864 to 4,088,886 _19375 IAI46_19380: IAI46_19380 - DUF1007 family protein, at 4,088,877 to 4,089,545 _19380 IAI46_19385: IAI46_19385 - stationary phase inducible protein CsiE, at 4,089,690 to 4,090,955 _19385 IAI46_19390: IAI46_19390 - 3-phenylpropionate MFS transporter, at 4,090,952 to 4,092,103 _19390 Position (kb) 4089 4090 4091Strain fitness (log2 ratio) -2 -1 0 1at 4088.771 kb on + strand, within IAI46_19375at 4088.927 kb on + strandat 4088.928 kb on - strandat 4088.928 kb on - strandat 4089.063 kb on - strand, within IAI46_19380at 4089.063 kb on - strand, within IAI46_19380at 4089.064 kb on + strand, within IAI46_19380at 4089.064 kb on + strand, within IAI46_19380at 4089.065 kb on - strand, within IAI46_19380at 4089.072 kb on - strand, within IAI46_19380at 4089.082 kb on + strand, within IAI46_19380at 4089.082 kb on + strand, within IAI46_19380at 4089.082 kb on + strand, within IAI46_19380at 4089.083 kb on - strand, within IAI46_19380at 4089.083 kb on - strand, within IAI46_19380at 4089.083 kb on - strand, within IAI46_19380at 4089.094 kb on + strand, within IAI46_19380at 4089.094 kb on + strand, within IAI46_19380at 4089.094 kb on + strand, within IAI46_19380at 4089.094 kb on + strand, within IAI46_19380at 4089.254 kb on - strand, within IAI46_19380at 4089.337 kb on + strand, within IAI46_19380at 4089.338 kb on - strand, within IAI46_19380at 4089.338 kb on - strand, within IAI46_19380at 4089.338 kb on - strand, within IAI46_19380at 4089.369 kb on - strand, within IAI46_19380at 4089.428 kb on + strand, within IAI46_19380at 4089.434 kb on + strand, within IAI46_19380at 4089.495 kb on - strandat 4089.501 kb on + strandat 4089.520 kb on + strandat 4089.528 kb on - strandat 4089.556 kb on + strandat 4089.557 kb on - strandat 4089.571 kb on - strandat 4089.579 kb on + strandat 4089.649 kb on - strandat 4089.649 kb on - strandat 4089.654 kb on + strandat 4089.654 kb on + strandat 4089.654 kb on + strandat 4089.654 kb on + strandat 4089.654 kb on + strandat 4089.655 kb on - strandat 4089.655 kb on - strandat 4089.689 kb on + strandat 4089.690 kb on - strandat 4089.762 kb on + strandat 4089.794 kb on + strandat 4089.839 kb on + strand, within IAI46_19385at 4089.840 kb on - strand, within IAI46_19385at 4089.840 kb on - strand, within IAI46_19385at 4089.841 kb on + strand, within IAI46_19385at 4089.841 kb on + strand, within IAI46_19385at 4090.137 kb on + strand, within IAI46_19385at 4090.258 kb on + strand, within IAI46_19385at 4090.341 kb on + strand, within IAI46_19385at 4090.517 kb on + strand, within IAI46_19385at 4090.544 kb on + strand, within IAI46_19385at 4090.544 kb on + strand, within IAI46_19385at 4090.544 kb on + strand, within IAI46_19385at 4090.545 kb on - strand, within IAI46_19385at 4090.545 kb on - strand, within IAI46_19385at 4090.548 kb on + strand, within IAI46_19385at 4090.548 kb on + strand, within IAI46_19385at 4090.549 kb on - strand, within IAI46_19385at 4090.565 kb on + strand, within IAI46_19385at 4090.602 kb on + strand, within IAI46_19385at 4090.602 kb on + strand, within IAI46_19385at 4090.603 kb on - strand, within IAI46_19385at 4090.608 kb on - strand, within IAI46_19385at 4090.760 kb on - strand, within IAI46_19385at 4090.803 kb on + strand, within IAI46_19385at 4090.851 kb on + strandat 4090.852 kb on - strandat 4090.896 kb on + strandat 4091.330 kb on - strand, within IAI46_19390at 4091.335 kb on + strand, within IAI46_19390at 4091.379 kb on + strand, within IAI46_19390at 4091.379 kb on + strand, within IAI46_19390at 4091.419 kb on - strand, within IAI46_19390at 4091.419 kb on - strand, within IAI46_19390at 4091.436 kb on + strand, within IAI46_19390at 4091.437 kb on - strand, within IAI46_19390at 4091.437 kb on - strand, within IAI46_19390at 4091.437 kb on - strand, within IAI46_19390at 4091.504 kb on + strand, within IAI46_19390at 4091.504 kb on + strand, within IAI46_19390at 4091.504 kb on + strand, within IAI46_19390at 4091.504 kb on + strand, within IAI46_19390at 4091.605 kb on + strand, within IAI46_19390at 4091.635 kb on + strand, within IAI46_19390

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,088,771 + IAI46_19375 0.89 +1.4
4,088,927 + -1.1
4,088,928 - -0.1
4,088,928 - -0.6
4,089,063 - IAI46_19380 0.28 +1.0
4,089,063 - IAI46_19380 0.28 -0.0
4,089,064 + IAI46_19380 0.28 -1.0
4,089,064 + IAI46_19380 0.28 +0.6
4,089,065 - IAI46_19380 0.28 +1.1
4,089,072 - IAI46_19380 0.29 -0.3
4,089,082 + IAI46_19380 0.31 +0.1
4,089,082 + IAI46_19380 0.31 +1.4
4,089,082 + IAI46_19380 0.31 -0.4
4,089,083 - IAI46_19380 0.31 -0.4
4,089,083 - IAI46_19380 0.31 -0.8
4,089,083 - IAI46_19380 0.31 -0.3
4,089,094 + IAI46_19380 0.32 +0.2
4,089,094 + IAI46_19380 0.32 +1.2
4,089,094 + IAI46_19380 0.32 -0.3
4,089,094 + IAI46_19380 0.32 -0.1
4,089,254 - IAI46_19380 0.56 -0.7
4,089,337 + IAI46_19380 0.69 +0.7
4,089,338 - IAI46_19380 0.69 +1.2
4,089,338 - IAI46_19380 0.69 +0.0
4,089,338 - IAI46_19380 0.69 +1.1
4,089,369 - IAI46_19380 0.74 +0.9
4,089,428 + IAI46_19380 0.82 +1.2
4,089,434 + IAI46_19380 0.83 -1.4
4,089,495 - +0.6
4,089,501 + -0.9
4,089,520 + +0.2
4,089,528 - +1.3
4,089,556 + -2.0
4,089,557 - -0.2
4,089,571 - +0.4
4,089,579 + -0.2
4,089,649 - -0.4
4,089,649 - -0.6
4,089,654 + +0.2
4,089,654 + +0.9
4,089,654 + +0.4
4,089,654 + -0.4
4,089,654 + -0.4
4,089,655 - -0.1
4,089,655 - -1.7
4,089,689 + +0.2
4,089,690 - +1.0
4,089,762 + +0.5
4,089,794 + -0.7
4,089,839 + IAI46_19385 0.12 +0.5
4,089,840 - IAI46_19385 0.12 +0.0
4,089,840 - IAI46_19385 0.12 +0.8
4,089,841 + IAI46_19385 0.12 +0.9
4,089,841 + IAI46_19385 0.12 -0.1
4,090,137 + IAI46_19385 0.35 +1.3
4,090,258 + IAI46_19385 0.45 +0.3
4,090,341 + IAI46_19385 0.51 +0.6
4,090,517 + IAI46_19385 0.65 +0.3
4,090,544 + IAI46_19385 0.67 +0.8
4,090,544 + IAI46_19385 0.67 +0.0
4,090,544 + IAI46_19385 0.67 -0.1
4,090,545 - IAI46_19385 0.68 -0.1
4,090,545 - IAI46_19385 0.68 -0.5
4,090,548 + IAI46_19385 0.68 +0.3
4,090,548 + IAI46_19385 0.68 -1.0
4,090,549 - IAI46_19385 0.68 +1.0
4,090,565 + IAI46_19385 0.69 -0.3
4,090,602 + IAI46_19385 0.72 +0.5
4,090,602 + IAI46_19385 0.72 +0.1
4,090,603 - IAI46_19385 0.72 -1.5
4,090,608 - IAI46_19385 0.73 -0.3
4,090,760 - IAI46_19385 0.85 +0.4
4,090,803 + IAI46_19385 0.88 +1.0
4,090,851 + +0.9
4,090,852 - -0.2
4,090,896 + -0.6
4,091,330 - IAI46_19390 0.33 +0.7
4,091,335 + IAI46_19390 0.33 +0.2
4,091,379 + IAI46_19390 0.37 +1.0
4,091,379 + IAI46_19390 0.37 -0.0
4,091,419 - IAI46_19390 0.41 +0.6
4,091,419 - IAI46_19390 0.41 -1.4
4,091,436 + IAI46_19390 0.42 -0.3
4,091,437 - IAI46_19390 0.42 +1.0
4,091,437 - IAI46_19390 0.42 +0.6
4,091,437 - IAI46_19390 0.42 +0.6
4,091,504 + IAI46_19390 0.48 -0.3
4,091,504 + IAI46_19390 0.48 +0.2
4,091,504 + IAI46_19390 0.48 +0.8
4,091,504 + IAI46_19390 0.48 +1.2
4,091,605 + IAI46_19390 0.57 -0.7
4,091,635 + IAI46_19390 0.59 +1.2

Or see this region's nucleotide sequence