Strain Fitness in Serratia liquefaciens MT49 around IAI46_18930

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18925 and IAI46_18930 are separated by 542 nucleotidesIAI46_18930 and IAI46_18935 are separated by 195 nucleotides IAI46_18925: IAI46_18925 - sensor domain-containing phosphodiesterase, at 3,985,144 to 3,987,396 _18925 IAI46_18930: IAI46_18930 - DUF2633 family protein, at 3,987,939 to 3,988,118 _18930 IAI46_18935: IAI46_18935 - magnesium transporter, at 3,988,314 to 3,989,747 _18935 Position (kb) 3987 3988 3989Strain fitness (log2 ratio) -2 -1 0 1 2at 3987.089 kb on + strand, within IAI46_18925at 3987.089 kb on + strand, within IAI46_18925at 3987.090 kb on - strand, within IAI46_18925at 3987.186 kb on - strandat 3987.220 kb on + strandat 3987.221 kb on - strandat 3987.225 kb on - strandat 3987.225 kb on - strandat 3987.293 kb on - strandat 3987.389 kb on - strandat 3987.432 kb on + strandat 3987.439 kb on - strandat 3987.464 kb on + strandat 3987.465 kb on - strandat 3987.469 kb on + strandat 3987.470 kb on - strandat 3987.585 kb on + strandat 3987.585 kb on + strandat 3987.606 kb on - strandat 3987.623 kb on - strandat 3987.623 kb on - strandat 3987.660 kb on + strandat 3987.661 kb on - strandat 3987.663 kb on - strandat 3987.664 kb on + strandat 3987.665 kb on - strandat 3987.665 kb on - strandat 3987.776 kb on + strandat 3987.794 kb on + strandat 3987.794 kb on + strandat 3987.795 kb on - strandat 3987.795 kb on - strandat 3987.795 kb on - strandat 3987.795 kb on - strandat 3987.795 kb on - strandat 3987.795 kb on - strandat 3987.830 kb on + strandat 3987.853 kb on + strandat 3987.853 kb on + strandat 3987.854 kb on - strandat 3987.909 kb on - strandat 3987.936 kb on + strandat 3987.936 kb on + strandat 3987.936 kb on + strandat 3987.936 kb on + strandat 3987.936 kb on + strandat 3987.936 kb on + strandat 3987.937 kb on - strandat 3987.937 kb on - strandat 3987.938 kb on + strandat 3987.938 kb on + strandat 3987.938 kb on + strandat 3987.938 kb on + strandat 3987.938 kb on + strandat 3987.939 kb on - strandat 3987.939 kb on - strandat 3987.939 kb on - strandat 3987.939 kb on - strandat 3987.939 kb on - strandat 3987.944 kb on + strandat 3987.973 kb on + strand, within IAI46_18930at 3987.993 kb on - strand, within IAI46_18930at 3988.018 kb on - strand, within IAI46_18930at 3988.155 kb on + strandat 3988.155 kb on + strandat 3988.156 kb on - strandat 3988.159 kb on + strandat 3988.159 kb on + strandat 3988.160 kb on - strandat 3988.160 kb on - strandat 3988.181 kb on + strandat 3988.203 kb on + strandat 3988.204 kb on - strandat 3988.204 kb on - strandat 3988.207 kb on + strandat 3988.207 kb on + strandat 3988.207 kb on + strandat 3988.208 kb on - strandat 3988.208 kb on - strandat 3988.208 kb on - strandat 3988.208 kb on - strandat 3988.256 kb on + strandat 3988.256 kb on + strandat 3988.257 kb on - strandat 3988.257 kb on - strandat 3988.257 kb on - strandat 3988.257 kb on - strandat 3988.264 kb on - strandat 3988.264 kb on - strandat 3988.268 kb on - strandat 3988.268 kb on - strandat 3988.284 kb on + strandat 3988.284 kb on + strandat 3988.331 kb on + strandat 3988.331 kb on + strandat 3988.331 kb on + strandat 3988.332 kb on - strandat 3988.456 kb on + strandat 3988.457 kb on - strandat 3988.695 kb on + strand, within IAI46_18935at 3988.707 kb on + strand, within IAI46_18935at 3988.708 kb on - strand, within IAI46_18935at 3988.708 kb on - strand, within IAI46_18935at 3988.708 kb on - strand, within IAI46_18935at 3988.854 kb on - strand, within IAI46_18935at 3988.864 kb on + strand, within IAI46_18935at 3988.864 kb on + strand, within IAI46_18935at 3988.865 kb on - strand, within IAI46_18935at 3988.931 kb on + strand, within IAI46_18935at 3988.977 kb on - strand, within IAI46_18935

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,987,089 + IAI46_18925 0.86 +0.7
3,987,089 + IAI46_18925 0.86 -0.5
3,987,090 - IAI46_18925 0.86 +0.0
3,987,186 - +0.7
3,987,220 + -0.3
3,987,221 - +1.0
3,987,225 - -1.3
3,987,225 - +0.5
3,987,293 - +0.4
3,987,389 - +0.2
3,987,432 + +0.3
3,987,439 - -1.0
3,987,464 + +0.7
3,987,465 - -1.1
3,987,469 + -1.4
3,987,470 - +0.5
3,987,585 + +0.7
3,987,585 + +0.7
3,987,606 - -2.5
3,987,623 - -1.3
3,987,623 - -0.4
3,987,660 + +0.5
3,987,661 - +0.0
3,987,663 - +0.2
3,987,664 + +0.8
3,987,665 - -0.3
3,987,665 - +0.2
3,987,776 + -0.7
3,987,794 + -0.2
3,987,794 + +1.1
3,987,795 - +0.5
3,987,795 - -0.0
3,987,795 - +0.8
3,987,795 - +0.1
3,987,795 - -0.1
3,987,795 - +0.1
3,987,830 + +0.3
3,987,853 + -0.2
3,987,853 + -0.3
3,987,854 - +0.2
3,987,909 - +1.3
3,987,936 + +0.5
3,987,936 + +1.4
3,987,936 + +0.0
3,987,936 + -0.4
3,987,936 + -0.5
3,987,936 + +0.1
3,987,937 - -0.5
3,987,937 - -0.3
3,987,938 + -1.1
3,987,938 + +0.5
3,987,938 + -0.1
3,987,938 + -0.2
3,987,938 + -0.9
3,987,939 - +0.0
3,987,939 - +0.9
3,987,939 - -0.4
3,987,939 - +0.1
3,987,939 - -0.4
3,987,944 + +0.7
3,987,973 + IAI46_18930 0.19 -0.2
3,987,993 - IAI46_18930 0.30 -0.7
3,988,018 - IAI46_18930 0.44 +0.5
3,988,155 + -1.2
3,988,155 + -1.0
3,988,156 - +0.3
3,988,159 + -0.0
3,988,159 + +0.5
3,988,160 - +0.8
3,988,160 - +0.4
3,988,181 + -0.3
3,988,203 + +1.0
3,988,204 - +0.3
3,988,204 - +0.3
3,988,207 + +1.2
3,988,207 + -0.2
3,988,207 + -0.1
3,988,208 - +0.0
3,988,208 - -0.7
3,988,208 - +0.4
3,988,208 - +2.1
3,988,256 + +0.9
3,988,256 + -1.2
3,988,257 - -0.0
3,988,257 - -0.1
3,988,257 - +0.0
3,988,257 - +0.2
3,988,264 - -0.3
3,988,264 - +0.9
3,988,268 - +0.6
3,988,268 - -1.2
3,988,284 + -0.0
3,988,284 + -0.0
3,988,331 + -0.1
3,988,331 + -0.3
3,988,331 + -0.2
3,988,332 - -0.4
3,988,456 + -0.6
3,988,457 - +0.9
3,988,695 + IAI46_18935 0.27 +0.2
3,988,707 + IAI46_18935 0.27 -0.6
3,988,708 - IAI46_18935 0.27 +0.2
3,988,708 - IAI46_18935 0.27 +0.7
3,988,708 - IAI46_18935 0.27 +0.6
3,988,854 - IAI46_18935 0.38 +0.7
3,988,864 + IAI46_18935 0.38 +1.0
3,988,864 + IAI46_18935 0.38 +0.5
3,988,865 - IAI46_18935 0.38 -0.6
3,988,931 + IAI46_18935 0.43 -0.6
3,988,977 - IAI46_18935 0.46 +0.8

Or see this region's nucleotide sequence