Strain Fitness in Serratia liquefaciens MT49 around IAI46_18790

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18780 and IAI46_18785 are separated by 101 nucleotidesIAI46_18785 and IAI46_18790 are separated by 2 nucleotidesIAI46_18790 and IAI46_18795 are separated by 43 nucleotides IAI46_18780: IAI46_18780 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,955,316 to 3,956,197 _18780 IAI46_18785: IAI46_18785 - glycine cleavage system transcriptional repressor, at 3,956,299 to 3,956,913 _18785 IAI46_18790: IAI46_18790 - thioredoxin-dependent thiol peroxidase, at 3,956,916 to 3,957,380 _18790 IAI46_18795: IAI46_18795 - AI-2E family transporter, at 3,957,424 to 3,958,494 _18795 Position (kb) 3956 3957 3958Strain fitness (log2 ratio) -1 0 1at 3956.019 kb on - strand, within IAI46_18780at 3956.102 kb on + strand, within IAI46_18780at 3956.103 kb on - strand, within IAI46_18780at 3956.103 kb on - strand, within IAI46_18780at 3956.109 kb on + strandat 3956.168 kb on - strandat 3956.182 kb on + strandat 3956.183 kb on - strandat 3956.192 kb on - strandat 3956.273 kb on + strandat 3956.273 kb on + strandat 3956.304 kb on + strandat 3956.366 kb on - strand, within IAI46_18785at 3956.366 kb on - strand, within IAI46_18785at 3956.457 kb on + strand, within IAI46_18785at 3956.526 kb on + strand, within IAI46_18785at 3956.767 kb on + strand, within IAI46_18785at 3956.841 kb on + strand, within IAI46_18785at 3956.842 kb on - strand, within IAI46_18785at 3956.865 kb on + strandat 3956.866 kb on - strandat 3956.866 kb on - strandat 3956.868 kb on + strandat 3956.868 kb on + strandat 3956.869 kb on - strandat 3956.869 kb on - strandat 3956.869 kb on - strandat 3956.882 kb on - strandat 3956.911 kb on + strandat 3956.912 kb on - strandat 3957.021 kb on + strand, within IAI46_18790at 3957.021 kb on + strand, within IAI46_18790at 3957.053 kb on + strand, within IAI46_18790at 3957.134 kb on + strand, within IAI46_18790at 3957.261 kb on + strand, within IAI46_18790at 3957.366 kb on + strandat 3957.425 kb on + strandat 3957.425 kb on + strandat 3957.426 kb on - strandat 3957.426 kb on - strandat 3957.642 kb on - strand, within IAI46_18795at 3957.732 kb on + strand, within IAI46_18795at 3957.782 kb on + strand, within IAI46_18795at 3957.812 kb on + strand, within IAI46_18795at 3957.812 kb on + strand, within IAI46_18795at 3957.813 kb on - strand, within IAI46_18795at 3957.860 kb on + strand, within IAI46_18795at 3957.860 kb on + strand, within IAI46_18795at 3957.860 kb on + strand, within IAI46_18795at 3957.861 kb on - strand, within IAI46_18795at 3958.121 kb on - strand, within IAI46_18795at 3958.163 kb on + strand, within IAI46_18795at 3958.164 kb on - strand, within IAI46_18795at 3958.347 kb on - strand, within IAI46_18795

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,956,019 - IAI46_18780 0.80 -0.1
3,956,102 + IAI46_18780 0.89 +1.0
3,956,103 - IAI46_18780 0.89 -1.4
3,956,103 - IAI46_18780 0.89 +0.5
3,956,109 + +0.3
3,956,168 - -0.2
3,956,182 + -0.6
3,956,183 - +0.2
3,956,192 - -0.5
3,956,273 + -0.6
3,956,273 + +0.4
3,956,304 + +0.2
3,956,366 - IAI46_18785 0.11 +0.2
3,956,366 - IAI46_18785 0.11 +0.5
3,956,457 + IAI46_18785 0.26 +0.2
3,956,526 + IAI46_18785 0.37 +0.8
3,956,767 + IAI46_18785 0.76 -0.7
3,956,841 + IAI46_18785 0.88 -0.0
3,956,842 - IAI46_18785 0.88 +0.1
3,956,865 + -0.1
3,956,866 - +0.4
3,956,866 - +0.8
3,956,868 + -0.1
3,956,868 + +0.6
3,956,869 - +0.6
3,956,869 - +1.6
3,956,869 - -0.5
3,956,882 - +0.4
3,956,911 + +0.8
3,956,912 - -0.5
3,957,021 + IAI46_18790 0.23 +1.1
3,957,021 + IAI46_18790 0.23 -0.2
3,957,053 + IAI46_18790 0.29 -1.2
3,957,134 + IAI46_18790 0.47 +0.3
3,957,261 + IAI46_18790 0.74 -1.0
3,957,366 + +1.1
3,957,425 + -0.1
3,957,425 + -0.8
3,957,426 - +0.6
3,957,426 - -0.6
3,957,642 - IAI46_18795 0.20 +0.5
3,957,732 + IAI46_18795 0.29 +0.4
3,957,782 + IAI46_18795 0.33 -0.7
3,957,812 + IAI46_18795 0.36 +0.9
3,957,812 + IAI46_18795 0.36 +0.5
3,957,813 - IAI46_18795 0.36 -0.1
3,957,860 + IAI46_18795 0.41 +0.8
3,957,860 + IAI46_18795 0.41 -0.3
3,957,860 + IAI46_18795 0.41 -0.3
3,957,861 - IAI46_18795 0.41 -0.0
3,958,121 - IAI46_18795 0.65 -1.1
3,958,163 + IAI46_18795 0.69 +0.6
3,958,164 - IAI46_18795 0.69 -1.5
3,958,347 - IAI46_18795 0.86 -0.6

Or see this region's nucleotide sequence