Strain Fitness in Serratia liquefaciens MT49 around IAI46_18580

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18575 and IAI46_18580 overlap by 11 nucleotidesIAI46_18580 and IAI46_18585 are separated by 48 nucleotides IAI46_18575: IAI46_18575 - S-methylmethionine permease, at 3,911,165 to 3,912,574 _18575 IAI46_18580: IAI46_18580 - homocysteine S-methyltransferase, at 3,912,564 to 3,913,502 _18580 IAI46_18585: IAI46_18585 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 3,913,551 to 3,915,830 _18585 Position (kb) 3912 3913 3914Strain fitness (log2 ratio) -2 -1 0 1at 3911.595 kb on + strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.656 kb on + strand, within IAI46_18575at 3911.938 kb on + strand, within IAI46_18575at 3912.023 kb on + strand, within IAI46_18575at 3912.023 kb on + strand, within IAI46_18575at 3912.023 kb on + strand, within IAI46_18575at 3912.089 kb on + strand, within IAI46_18575at 3912.089 kb on + strand, within IAI46_18575at 3912.090 kb on - strand, within IAI46_18575at 3912.161 kb on - strand, within IAI46_18575at 3912.211 kb on - strand, within IAI46_18575at 3912.223 kb on - strand, within IAI46_18575at 3912.375 kb on - strand, within IAI46_18575at 3912.516 kb on - strandat 3912.518 kb on + strandat 3912.519 kb on - strandat 3912.736 kb on - strand, within IAI46_18580at 3912.774 kb on + strand, within IAI46_18580at 3912.774 kb on + strand, within IAI46_18580at 3912.879 kb on + strand, within IAI46_18580at 3912.946 kb on - strand, within IAI46_18580at 3913.267 kb on + strand, within IAI46_18580at 3913.268 kb on - strand, within IAI46_18580at 3913.341 kb on + strand, within IAI46_18580at 3913.405 kb on + strand, within IAI46_18580at 3913.458 kb on - strandat 3913.469 kb on + strandat 3913.470 kb on - strandat 3913.552 kb on + strandat 3913.554 kb on + strandat 3913.554 kb on + strandat 3913.554 kb on + strandat 3913.650 kb on + strandat 3913.676 kb on + strandat 3913.711 kb on + strandat 3913.712 kb on - strandat 3913.712 kb on - strandat 3913.712 kb on - strandat 3913.743 kb on - strandat 3913.743 kb on - strandat 3913.743 kb on - strandat 3913.883 kb on + strand, within IAI46_18585at 3914.035 kb on + strand, within IAI46_18585at 3914.035 kb on + strand, within IAI46_18585at 3914.035 kb on + strand, within IAI46_18585at 3914.036 kb on - strand, within IAI46_18585at 3914.036 kb on - strand, within IAI46_18585at 3914.036 kb on - strand, within IAI46_18585at 3914.036 kb on - strand, within IAI46_18585at 3914.121 kb on + strand, within IAI46_18585at 3914.152 kb on + strand, within IAI46_18585at 3914.152 kb on + strand, within IAI46_18585at 3914.153 kb on - strand, within IAI46_18585at 3914.287 kb on + strand, within IAI46_18585at 3914.291 kb on - strand, within IAI46_18585at 3914.302 kb on + strand, within IAI46_18585

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,911,595 + IAI46_18575 0.30 +0.2
3,911,596 - IAI46_18575 0.31 -0.7
3,911,596 - IAI46_18575 0.31 +0.9
3,911,596 - IAI46_18575 0.31 +0.5
3,911,596 - IAI46_18575 0.31 -0.7
3,911,656 + IAI46_18575 0.35 +0.9
3,911,938 + IAI46_18575 0.55 +0.1
3,912,023 + IAI46_18575 0.61 -0.1
3,912,023 + IAI46_18575 0.61 -0.8
3,912,023 + IAI46_18575 0.61 -1.1
3,912,089 + IAI46_18575 0.66 +0.4
3,912,089 + IAI46_18575 0.66 -0.7
3,912,090 - IAI46_18575 0.66 +0.2
3,912,161 - IAI46_18575 0.71 -0.7
3,912,211 - IAI46_18575 0.74 -0.2
3,912,223 - IAI46_18575 0.75 -0.3
3,912,375 - IAI46_18575 0.86 +0.1
3,912,516 - +0.7
3,912,518 + -0.7
3,912,519 - +0.0
3,912,736 - IAI46_18580 0.18 -0.0
3,912,774 + IAI46_18580 0.22 -0.3
3,912,774 + IAI46_18580 0.22 -1.9
3,912,879 + IAI46_18580 0.34 +0.3
3,912,946 - IAI46_18580 0.41 +0.0
3,913,267 + IAI46_18580 0.75 +1.2
3,913,268 - IAI46_18580 0.75 +0.3
3,913,341 + IAI46_18580 0.83 +0.6
3,913,405 + IAI46_18580 0.90 +0.0
3,913,458 - +0.4
3,913,469 + +0.6
3,913,470 - +0.6
3,913,552 + +0.9
3,913,554 + -1.5
3,913,554 + -1.1
3,913,554 + +0.0
3,913,650 + +0.9
3,913,676 + +0.0
3,913,711 + -0.8
3,913,712 - +0.3
3,913,712 - +0.3
3,913,712 - +0.6
3,913,743 - +0.8
3,913,743 - +0.5
3,913,743 - +0.6
3,913,883 + IAI46_18585 0.15 +0.4
3,914,035 + IAI46_18585 0.21 -1.6
3,914,035 + IAI46_18585 0.21 -1.2
3,914,035 + IAI46_18585 0.21 +0.5
3,914,036 - IAI46_18585 0.21 +0.8
3,914,036 - IAI46_18585 0.21 +1.2
3,914,036 - IAI46_18585 0.21 -0.1
3,914,036 - IAI46_18585 0.21 +0.3
3,914,121 + IAI46_18585 0.25 +0.3
3,914,152 + IAI46_18585 0.26 +0.2
3,914,152 + IAI46_18585 0.26 -1.3
3,914,153 - IAI46_18585 0.26 -0.6
3,914,287 + IAI46_18585 0.32 -1.7
3,914,291 - IAI46_18585 0.32 +0.4
3,914,302 + IAI46_18585 0.33 +0.3

Or see this region's nucleotide sequence