Strain Fitness in Serratia liquefaciens MT49 around IAI46_18260

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18255 and IAI46_18260 are separated by 378 nucleotidesIAI46_18260 and IAI46_18265 are separated by 155 nucleotidesIAI46_18265 and IAI46_18270 are separated by 60 nucleotidesIAI46_18270 and IAI46_18275 are separated by 314 nucleotides IAI46_18255: IAI46_18255 - Nramp family divalent metal transporter, at 3,843,363 to 3,844,595 _18255 IAI46_18260: IAI46_18260 - NupC/NupG family nucleoside CNT transporter, at 3,844,974 to 3,846,161 _18260 IAI46_18265: IAI46_18265 - tRNA-Ala, at 3,846,317 to 3,846,392 _18265 IAI46_18270: IAI46_18270 - tRNA-Ala, at 3,846,453 to 3,846,528 _18270 IAI46_18275: IAI46_18275 - formate/nitrite transporter family protein, at 3,846,843 to 3,847,628 _18275 Position (kb) 3844 3845 3846 3847Strain fitness (log2 ratio) -2 -1 0 1 2at 3844.091 kb on + strand, within IAI46_18255at 3844.091 kb on + strand, within IAI46_18255at 3844.091 kb on + strand, within IAI46_18255at 3844.092 kb on - strand, within IAI46_18255at 3844.092 kb on - strand, within IAI46_18255at 3844.092 kb on - strand, within IAI46_18255at 3844.093 kb on + strand, within IAI46_18255at 3844.093 kb on + strand, within IAI46_18255at 3844.093 kb on + strand, within IAI46_18255at 3844.093 kb on + strand, within IAI46_18255at 3844.093 kb on + strand, within IAI46_18255at 3844.093 kb on + strand, within IAI46_18255at 3844.094 kb on - strand, within IAI46_18255at 3844.094 kb on - strand, within IAI46_18255at 3844.094 kb on - strand, within IAI46_18255at 3844.094 kb on - strand, within IAI46_18255at 3844.094 kb on - strand, within IAI46_18255at 3844.173 kb on - strand, within IAI46_18255at 3844.501 kb on + strandat 3844.502 kb on - strandat 3844.608 kb on + strandat 3844.630 kb on - strandat 3844.632 kb on - strandat 3844.681 kb on - strandat 3844.762 kb on - strandat 3844.762 kb on - strandat 3844.794 kb on - strandat 3844.805 kb on - strandat 3845.032 kb on + strandat 3845.032 kb on + strandat 3845.033 kb on - strandat 3845.067 kb on + strandat 3845.068 kb on - strandat 3845.068 kb on - strandat 3845.096 kb on - strand, within IAI46_18260at 3845.096 kb on - strand, within IAI46_18260at 3845.107 kb on - strand, within IAI46_18260at 3845.255 kb on - strand, within IAI46_18260at 3845.273 kb on + strand, within IAI46_18260at 3845.301 kb on + strand, within IAI46_18260at 3845.302 kb on - strand, within IAI46_18260at 3845.302 kb on - strand, within IAI46_18260at 3845.333 kb on + strand, within IAI46_18260at 3845.435 kb on + strand, within IAI46_18260at 3845.435 kb on + strand, within IAI46_18260at 3845.436 kb on - strand, within IAI46_18260at 3845.441 kb on + strand, within IAI46_18260at 3845.472 kb on + strand, within IAI46_18260at 3845.472 kb on + strand, within IAI46_18260at 3845.472 kb on + strand, within IAI46_18260at 3845.472 kb on + strand, within IAI46_18260at 3845.472 kb on + strand, within IAI46_18260at 3845.473 kb on - strand, within IAI46_18260at 3845.473 kb on - strand, within IAI46_18260at 3845.473 kb on - strand, within IAI46_18260at 3845.526 kb on + strand, within IAI46_18260at 3845.526 kb on + strand, within IAI46_18260at 3845.527 kb on - strand, within IAI46_18260at 3845.527 kb on - strand, within IAI46_18260at 3845.527 kb on - strand, within IAI46_18260at 3845.527 kb on - strand, within IAI46_18260at 3845.527 kb on - strand, within IAI46_18260at 3845.527 kb on - strand, within IAI46_18260at 3845.616 kb on + strand, within IAI46_18260at 3845.617 kb on - strand, within IAI46_18260at 3845.617 kb on - strand, within IAI46_18260at 3845.695 kb on - strand, within IAI46_18260at 3845.861 kb on + strand, within IAI46_18260at 3845.861 kb on + strand, within IAI46_18260at 3845.862 kb on - strand, within IAI46_18260at 3846.110 kb on + strandat 3846.110 kb on + strandat 3846.110 kb on + strandat 3846.166 kb on - strandat 3846.177 kb on - strandat 3846.206 kb on - strandat 3846.225 kb on + strandat 3846.311 kb on - strandat 3846.385 kb on - strandat 3846.385 kb on - strandat 3846.385 kb on - strandat 3846.411 kb on - strandat 3846.426 kb on - strandat 3846.447 kb on - strandat 3846.447 kb on - strandat 3846.463 kb on - strand, within IAI46_18270at 3846.565 kb on - strandat 3846.567 kb on + strandat 3846.567 kb on + strandat 3846.731 kb on - strandat 3846.796 kb on + strandat 3846.796 kb on + strandat 3846.797 kb on - strandat 3846.797 kb on - strandat 3846.842 kb on + strandat 3846.843 kb on - strandat 3846.843 kb on - strandat 3846.843 kb on - strandat 3847.061 kb on + strand, within IAI46_18275at 3847.103 kb on + strand, within IAI46_18275at 3847.103 kb on + strand, within IAI46_18275at 3847.103 kb on + strand, within IAI46_18275at 3847.104 kb on - strand, within IAI46_18275at 3847.104 kb on - strand, within IAI46_18275at 3847.104 kb on - strand, within IAI46_18275at 3847.104 kb on - strand, within IAI46_18275at 3847.104 kb on - strand, within IAI46_18275at 3847.104 kb on - strand, within IAI46_18275at 3847.104 kb on - strand, within IAI46_18275

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,844,091 + IAI46_18255 0.59 -0.3
3,844,091 + IAI46_18255 0.59 -0.4
3,844,091 + IAI46_18255 0.59 -2.7
3,844,092 - IAI46_18255 0.59 +0.6
3,844,092 - IAI46_18255 0.59 -0.1
3,844,092 - IAI46_18255 0.59 -1.8
3,844,093 + IAI46_18255 0.59 +0.5
3,844,093 + IAI46_18255 0.59 -0.4
3,844,093 + IAI46_18255 0.59 +0.1
3,844,093 + IAI46_18255 0.59 -1.9
3,844,093 + IAI46_18255 0.59 -0.7
3,844,093 + IAI46_18255 0.59 +0.8
3,844,094 - IAI46_18255 0.59 +1.1
3,844,094 - IAI46_18255 0.59 -0.3
3,844,094 - IAI46_18255 0.59 +0.5
3,844,094 - IAI46_18255 0.59 +2.4
3,844,094 - IAI46_18255 0.59 -1.4
3,844,173 - IAI46_18255 0.66 +0.2
3,844,501 + -2.0
3,844,502 - +0.1
3,844,608 + +0.0
3,844,630 - +1.3
3,844,632 - -0.7
3,844,681 - +0.7
3,844,762 - +0.7
3,844,762 - +0.1
3,844,794 - -0.3
3,844,805 - +1.3
3,845,032 + -0.6
3,845,032 + +0.0
3,845,033 - -1.0
3,845,067 + +1.0
3,845,068 - +0.7
3,845,068 - -1.1
3,845,096 - IAI46_18260 0.10 +0.8
3,845,096 - IAI46_18260 0.10 -0.2
3,845,107 - IAI46_18260 0.11 -2.1
3,845,255 - IAI46_18260 0.24 +0.8
3,845,273 + IAI46_18260 0.25 -0.2
3,845,301 + IAI46_18260 0.28 +0.2
3,845,302 - IAI46_18260 0.28 +0.0
3,845,302 - IAI46_18260 0.28 -0.0
3,845,333 + IAI46_18260 0.30 -1.1
3,845,435 + IAI46_18260 0.39 -0.2
3,845,435 + IAI46_18260 0.39 +0.9
3,845,436 - IAI46_18260 0.39 -0.3
3,845,441 + IAI46_18260 0.39 +0.4
3,845,472 + IAI46_18260 0.42 -0.0
3,845,472 + IAI46_18260 0.42 -0.7
3,845,472 + IAI46_18260 0.42 +0.5
3,845,472 + IAI46_18260 0.42 +1.5
3,845,472 + IAI46_18260 0.42 +1.6
3,845,473 - IAI46_18260 0.42 +0.0
3,845,473 - IAI46_18260 0.42 +0.9
3,845,473 - IAI46_18260 0.42 +0.3
3,845,526 + IAI46_18260 0.46 +1.5
3,845,526 + IAI46_18260 0.46 +0.3
3,845,527 - IAI46_18260 0.47 +0.8
3,845,527 - IAI46_18260 0.47 -0.2
3,845,527 - IAI46_18260 0.47 +0.5
3,845,527 - IAI46_18260 0.47 -1.3
3,845,527 - IAI46_18260 0.47 +0.0
3,845,527 - IAI46_18260 0.47 -1.0
3,845,616 + IAI46_18260 0.54 +0.2
3,845,617 - IAI46_18260 0.54 -0.1
3,845,617 - IAI46_18260 0.54 -1.4
3,845,695 - IAI46_18260 0.61 +0.5
3,845,861 + IAI46_18260 0.75 +0.9
3,845,861 + IAI46_18260 0.75 +1.4
3,845,862 - IAI46_18260 0.75 -2.0
3,846,110 + -1.1
3,846,110 + -0.6
3,846,110 + +0.8
3,846,166 - -0.2
3,846,177 - -1.9
3,846,206 - +0.0
3,846,225 + -0.3
3,846,311 - -0.9
3,846,385 - +0.0
3,846,385 - -0.1
3,846,385 - -0.0
3,846,411 - -0.2
3,846,426 - -0.2
3,846,447 - -0.5
3,846,447 - -0.6
3,846,463 - IAI46_18270 0.13 -1.5
3,846,565 - -0.5
3,846,567 + -0.5
3,846,567 + +1.6
3,846,731 - +1.9
3,846,796 + +0.8
3,846,796 + -1.0
3,846,797 - +0.6
3,846,797 - +0.5
3,846,842 + -0.3
3,846,843 - +1.0
3,846,843 - +0.5
3,846,843 - +0.0
3,847,061 + IAI46_18275 0.28 -0.4
3,847,103 + IAI46_18275 0.33 -0.1
3,847,103 + IAI46_18275 0.33 +0.1
3,847,103 + IAI46_18275 0.33 +0.2
3,847,104 - IAI46_18275 0.33 +0.3
3,847,104 - IAI46_18275 0.33 +0.8
3,847,104 - IAI46_18275 0.33 +1.0
3,847,104 - IAI46_18275 0.33 +0.3
3,847,104 - IAI46_18275 0.33 +0.5
3,847,104 - IAI46_18275 0.33 +0.2
3,847,104 - IAI46_18275 0.33 +0.9

Or see this region's nucleotide sequence