Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18085 and IAI46_18090 overlap by 4 nucleotides IAI46_18090 and IAI46_18095 overlap by 4 nucleotides IAI46_18095 and IAI46_18100 overlap by 4 nucleotides IAI46_18100 and IAI46_18105 are separated by 118 nucleotides IAI46_18105 and IAI46_18110 overlap by 1 nucleotides
IAI46_18085: IAI46_18085 - heme lyase CcmF/NrfE family subunit, at 3,811,795 to 3,813,765
_18085
IAI46_18090: IAI46_18090 - cytochrome c maturation protein CcmE, at 3,813,762 to 3,814,256
_18090
IAI46_18095: IAI46_18095 - heme exporter protein CcmD, at 3,814,253 to 3,814,489
_18095
IAI46_18100: IAI46_18100 - heme ABC transporter permease, at 3,814,486 to 3,815,223
_18100
IAI46_18105: IAI46_18105 - heme exporter protein CcmB, at 3,815,342 to 3,816,001
_18105
IAI46_18110: IAI46_18110 - cytochrome c biogenesis heme-transporting ATPase CcmA, at 3,816,001 to 3,816,633
_18110
Position (kb)
3814
3815
3816 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3813.522 kb on - strand, within IAI46_18085 at 3813.635 kb on + strand at 3813.636 kb on - strand at 3813.636 kb on - strand at 3813.699 kb on - strand at 3813.736 kb on + strand at 3813.737 kb on - strand at 3813.737 kb on - strand at 3813.770 kb on + strand at 3813.796 kb on + strand at 3814.044 kb on + strand, within IAI46_18090 at 3814.145 kb on - strand, within IAI46_18090 at 3814.174 kb on + strand, within IAI46_18090 at 3814.174 kb on + strand, within IAI46_18090 at 3814.175 kb on - strand, within IAI46_18090 at 3814.215 kb on + strand at 3814.228 kb on + strand at 3814.312 kb on + strand, within IAI46_18095 at 3814.312 kb on + strand, within IAI46_18095 at 3814.409 kb on + strand, within IAI46_18095 at 3814.431 kb on + strand, within IAI46_18095 at 3814.432 kb on - strand, within IAI46_18095 at 3814.432 kb on - strand, within IAI46_18095 at 3814.441 kb on - strand, within IAI46_18095 at 3814.474 kb on + strand at 3814.606 kb on + strand, within IAI46_18100 at 3814.607 kb on - strand, within IAI46_18100 at 3814.656 kb on + strand, within IAI46_18100 at 3814.656 kb on + strand, within IAI46_18100 at 3814.657 kb on - strand, within IAI46_18100 at 3814.787 kb on + strand, within IAI46_18100 at 3814.788 kb on - strand, within IAI46_18100 at 3814.788 kb on - strand, within IAI46_18100 at 3814.788 kb on - strand, within IAI46_18100 at 3814.807 kb on - strand, within IAI46_18100 at 3814.809 kb on - strand, within IAI46_18100 at 3815.012 kb on + strand, within IAI46_18100 at 3815.012 kb on + strand, within IAI46_18100 at 3815.012 kb on + strand, within IAI46_18100 at 3815.013 kb on - strand, within IAI46_18100 at 3815.049 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.051 kb on + strand, within IAI46_18100 at 3815.052 kb on - strand, within IAI46_18100 at 3815.052 kb on - strand, within IAI46_18100 at 3815.052 kb on - strand, within IAI46_18100 at 3815.052 kb on - strand, within IAI46_18100 at 3815.052 kb on - strand, within IAI46_18100 at 3815.052 kb on - strand, within IAI46_18100 at 3815.052 kb on - strand, within IAI46_18100 at 3815.055 kb on + strand, within IAI46_18100 at 3815.055 kb on + strand, within IAI46_18100 at 3815.055 kb on + strand, within IAI46_18100 at 3815.056 kb on - strand, within IAI46_18100 at 3815.081 kb on + strand, within IAI46_18100 at 3815.180 kb on + strand at 3815.181 kb on - strand at 3815.181 kb on - strand at 3815.340 kb on - strand at 3815.343 kb on + strand at 3815.344 kb on - strand at 3815.394 kb on - strand at 3815.453 kb on - strand, within IAI46_18105 at 3815.484 kb on - strand, within IAI46_18105 at 3815.499 kb on + strand, within IAI46_18105 at 3815.499 kb on + strand, within IAI46_18105 at 3815.500 kb on - strand, within IAI46_18105 at 3815.500 kb on - strand, within IAI46_18105 at 3815.500 kb on - strand, within IAI46_18105 at 3815.612 kb on - strand, within IAI46_18105 at 3815.696 kb on + strand, within IAI46_18105 at 3815.697 kb on - strand, within IAI46_18105 at 3815.858 kb on + strand, within IAI46_18105 at 3815.859 kb on - strand, within IAI46_18105 at 3815.860 kb on + strand, within IAI46_18105 at 3815.987 kb on + strand at 3815.988 kb on - strand at 3816.034 kb on + strand at 3816.034 kb on + strand at 3816.035 kb on - strand at 3816.078 kb on + strand, within IAI46_18110 at 3816.079 kb on - strand, within IAI46_18110 at 3816.079 kb on - strand, within IAI46_18110 at 3816.088 kb on + strand, within IAI46_18110 at 3816.089 kb on - strand, within IAI46_18110 at 3816.089 kb on - strand, within IAI46_18110 at 3816.131 kb on - strand, within IAI46_18110 at 3816.131 kb on - strand, within IAI46_18110 at 3816.193 kb on - strand, within IAI46_18110
Per-strain Table
Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic remove 3,813,522 - IAI46_18085 0.88 -0.3 3,813,635 + +0.9 3,813,636 - -0.1 3,813,636 - +0.2 3,813,699 - +0.6 3,813,736 + -0.4 3,813,737 - +0.8 3,813,737 - -0.6 3,813,770 + +0.0 3,813,796 + +0.2 3,814,044 + IAI46_18090 0.57 -2.1 3,814,145 - IAI46_18090 0.77 -0.6 3,814,174 + IAI46_18090 0.83 -0.4 3,814,174 + IAI46_18090 0.83 -0.3 3,814,175 - IAI46_18090 0.83 -0.6 3,814,215 + +0.0 3,814,228 + +0.3 3,814,312 + IAI46_18095 0.25 +1.4 3,814,312 + IAI46_18095 0.25 -1.1 3,814,409 + IAI46_18095 0.66 -0.3 3,814,431 + IAI46_18095 0.75 +0.7 3,814,432 - IAI46_18095 0.76 -0.0 3,814,432 - IAI46_18095 0.76 +0.3 3,814,441 - IAI46_18095 0.79 -1.0 3,814,474 + -0.8 3,814,606 + IAI46_18100 0.16 +0.8 3,814,607 - IAI46_18100 0.16 +0.5 3,814,656 + IAI46_18100 0.23 +0.9 3,814,656 + IAI46_18100 0.23 -1.6 3,814,657 - IAI46_18100 0.23 +0.2 3,814,787 + IAI46_18100 0.41 -0.1 3,814,788 - IAI46_18100 0.41 +0.2 3,814,788 - IAI46_18100 0.41 -0.6 3,814,788 - IAI46_18100 0.41 -0.0 3,814,807 - IAI46_18100 0.43 -0.7 3,814,809 - IAI46_18100 0.44 +0.1 3,815,012 + IAI46_18100 0.71 +0.3 3,815,012 + IAI46_18100 0.71 +0.4 3,815,012 + IAI46_18100 0.71 +0.2 3,815,013 - IAI46_18100 0.71 +0.3 3,815,049 + IAI46_18100 0.76 -0.3 3,815,051 + IAI46_18100 0.77 -0.4 3,815,051 + IAI46_18100 0.77 -0.1 3,815,051 + IAI46_18100 0.77 -1.2 3,815,051 + IAI46_18100 0.77 -0.4 3,815,051 + IAI46_18100 0.77 -0.3 3,815,051 + IAI46_18100 0.77 +2.0 3,815,051 + IAI46_18100 0.77 +1.0 3,815,051 + IAI46_18100 0.77 +0.6 3,815,052 - IAI46_18100 0.77 +0.8 3,815,052 - IAI46_18100 0.77 +0.6 3,815,052 - IAI46_18100 0.77 +0.9 3,815,052 - IAI46_18100 0.77 -0.7 3,815,052 - IAI46_18100 0.77 +0.2 3,815,052 - IAI46_18100 0.77 -0.5 3,815,052 - IAI46_18100 0.77 +0.5 3,815,055 + IAI46_18100 0.77 -1.0 3,815,055 + IAI46_18100 0.77 +0.4 3,815,055 + IAI46_18100 0.77 -0.0 3,815,056 - IAI46_18100 0.77 +1.5 3,815,081 + IAI46_18100 0.81 +0.1 3,815,180 + -1.6 3,815,181 - +0.2 3,815,181 - +0.8 3,815,340 - -1.1 3,815,343 + +0.1 3,815,344 - +0.4 3,815,394 - +0.6 3,815,453 - IAI46_18105 0.17 +1.1 3,815,484 - IAI46_18105 0.22 +0.9 3,815,499 + IAI46_18105 0.24 -1.0 3,815,499 + IAI46_18105 0.24 -1.0 3,815,500 - IAI46_18105 0.24 -0.7 3,815,500 - IAI46_18105 0.24 +0.9 3,815,500 - IAI46_18105 0.24 +0.8 3,815,612 - IAI46_18105 0.41 -0.7 3,815,696 + IAI46_18105 0.54 -1.4 3,815,697 - IAI46_18105 0.54 -0.3 3,815,858 + IAI46_18105 0.78 +0.1 3,815,859 - IAI46_18105 0.78 -0.3 3,815,860 + IAI46_18105 0.78 -0.3 3,815,987 + -0.2 3,815,988 - +0.6 3,816,034 + +0.0 3,816,034 + -1.1 3,816,035 - -0.8 3,816,078 + IAI46_18110 0.12 +0.4 3,816,079 - IAI46_18110 0.12 -0.7 3,816,079 - IAI46_18110 0.12 -0.3 3,816,088 + IAI46_18110 0.14 -0.2 3,816,089 - IAI46_18110 0.14 +0.4 3,816,089 - IAI46_18110 0.14 -1.4 3,816,131 - IAI46_18110 0.21 +0.3 3,816,131 - IAI46_18110 0.21 -0.7 3,816,193 - IAI46_18110 0.30 -0.0
Or see this region's nucleotide sequence