Strain Fitness in Serratia liquefaciens MT49 around IAI46_18040

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18030 and IAI46_18035 are separated by 170 nucleotidesIAI46_18035 and IAI46_18040 are separated by 66 nucleotidesIAI46_18040 and IAI46_18045 are separated by 405 nucleotides IAI46_18030: IAI46_18030 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 3,800,374 to 3,801,306 _18030 IAI46_18035: IAI46_18035 - endonuclease SmrB, at 3,801,477 to 3,802,007 _18035 IAI46_18040: IAI46_18040 - phosphohistidine phosphatase SixA, at 3,802,074 to 3,802,556 _18040 IAI46_18045: IAI46_18045 - fatty acid oxidation complex subunit alpha FadJ, at 3,802,962 to 3,805,127 _18045 Position (kb) 3802 3803Strain fitness (log2 ratio) -2 -1 0 1 2at 3801.132 kb on + strand, within IAI46_18030at 3801.206 kb on + strand, within IAI46_18030at 3801.206 kb on + strand, within IAI46_18030at 3801.207 kb on - strand, within IAI46_18030at 3801.207 kb on - strand, within IAI46_18030at 3801.207 kb on - strand, within IAI46_18030at 3801.209 kb on + strand, within IAI46_18030at 3801.209 kb on + strand, within IAI46_18030at 3801.209 kb on + strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.210 kb on - strand, within IAI46_18030at 3801.252 kb on + strandat 3801.252 kb on + strandat 3801.252 kb on + strandat 3801.253 kb on - strandat 3801.253 kb on - strandat 3801.253 kb on - strandat 3801.348 kb on + strandat 3801.349 kb on - strandat 3801.349 kb on - strandat 3801.441 kb on - strandat 3801.533 kb on - strand, within IAI46_18035at 3801.533 kb on - strand, within IAI46_18035at 3801.536 kb on - strand, within IAI46_18035at 3801.711 kb on + strand, within IAI46_18035at 3801.982 kb on + strandat 3801.983 kb on - strandat 3802.077 kb on + strandat 3802.082 kb on + strandat 3802.127 kb on - strand, within IAI46_18040at 3802.231 kb on - strand, within IAI46_18040at 3802.285 kb on + strand, within IAI46_18040at 3802.286 kb on - strand, within IAI46_18040at 3802.286 kb on - strand, within IAI46_18040at 3802.444 kb on - strand, within IAI46_18040at 3802.541 kb on + strandat 3802.556 kb on + strandat 3802.557 kb on - strandat 3802.582 kb on - strandat 3802.588 kb on - strandat 3802.589 kb on + strandat 3802.762 kb on - strandat 3802.844 kb on + strandat 3802.844 kb on + strandat 3802.849 kb on + strandat 3802.849 kb on + strandat 3802.860 kb on + strandat 3802.870 kb on + strandat 3802.872 kb on + strandat 3802.873 kb on - strandat 3802.907 kb on - strandat 3802.931 kb on + strandat 3802.931 kb on + strandat 3802.936 kb on + strandat 3802.937 kb on - strandat 3802.937 kb on - strandat 3802.940 kb on - strandat 3803.057 kb on - strandat 3803.069 kb on + strandat 3803.070 kb on - strandat 3803.070 kb on - strandat 3803.070 kb on - strandat 3803.099 kb on + strandat 3803.099 kb on + strandat 3803.099 kb on + strandat 3803.100 kb on - strandat 3803.101 kb on + strandat 3803.101 kb on + strandat 3803.227 kb on - strand, within IAI46_18045at 3803.256 kb on + strand, within IAI46_18045at 3803.291 kb on - strand, within IAI46_18045at 3803.456 kb on + strand, within IAI46_18045at 3803.500 kb on - strand, within IAI46_18045

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,801,132 + IAI46_18030 0.81 -0.5
3,801,206 + IAI46_18030 0.89 +0.4
3,801,206 + IAI46_18030 0.89 -0.9
3,801,207 - IAI46_18030 0.89 +0.9
3,801,207 - IAI46_18030 0.89 -0.4
3,801,207 - IAI46_18030 0.89 +0.4
3,801,209 + IAI46_18030 0.89 -0.3
3,801,209 + IAI46_18030 0.89 +0.6
3,801,209 + IAI46_18030 0.89 +0.0
3,801,210 - IAI46_18030 0.90 +0.0
3,801,210 - IAI46_18030 0.90 +0.3
3,801,210 - IAI46_18030 0.90 +1.0
3,801,210 - IAI46_18030 0.90 +0.3
3,801,210 - IAI46_18030 0.90 +0.7
3,801,210 - IAI46_18030 0.90 -0.5
3,801,210 - IAI46_18030 0.90 +0.2
3,801,210 - IAI46_18030 0.90 -0.4
3,801,252 + +0.2
3,801,252 + +1.0
3,801,252 + -1.8
3,801,253 - +0.1
3,801,253 - +0.2
3,801,253 - -1.8
3,801,348 + +0.2
3,801,349 - -0.1
3,801,349 - +0.2
3,801,441 - +0.8
3,801,533 - IAI46_18035 0.11 +2.6
3,801,533 - IAI46_18035 0.11 -0.6
3,801,536 - IAI46_18035 0.11 +0.2
3,801,711 + IAI46_18035 0.44 +0.0
3,801,982 + -0.0
3,801,983 - -0.5
3,802,077 + +0.3
3,802,082 + -1.0
3,802,127 - IAI46_18040 0.11 +0.0
3,802,231 - IAI46_18040 0.33 +0.5
3,802,285 + IAI46_18040 0.44 +1.0
3,802,286 - IAI46_18040 0.44 -1.0
3,802,286 - IAI46_18040 0.44 -1.1
3,802,444 - IAI46_18040 0.77 +0.6
3,802,541 + -1.2
3,802,556 + +1.0
3,802,557 - +0.6
3,802,582 - -0.1
3,802,588 - -0.7
3,802,589 + -1.1
3,802,762 - +0.5
3,802,844 + +0.1
3,802,844 + -0.1
3,802,849 + +0.3
3,802,849 + -2.0
3,802,860 + -0.6
3,802,870 + +0.8
3,802,872 + +0.5
3,802,873 - +1.0
3,802,907 - +0.6
3,802,931 + +0.1
3,802,931 + +0.2
3,802,936 + +0.4
3,802,937 - -0.1
3,802,937 - -0.8
3,802,940 - +0.6
3,803,057 - +0.1
3,803,069 + +0.3
3,803,070 - +0.6
3,803,070 - +0.0
3,803,070 - +0.4
3,803,099 + -0.2
3,803,099 + -1.3
3,803,099 + +1.6
3,803,100 - +0.3
3,803,101 + -0.3
3,803,101 + +0.7
3,803,227 - IAI46_18045 0.12 +0.6
3,803,256 + IAI46_18045 0.14 -0.5
3,803,291 - IAI46_18045 0.15 +0.2
3,803,456 + IAI46_18045 0.23 +1.0
3,803,500 - IAI46_18045 0.25 -0.5

Or see this region's nucleotide sequence