Strain Fitness in Serratia liquefaciens MT49 around IAI46_17860

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17855 and IAI46_17860 are separated by 116 nucleotidesIAI46_17860 and IAI46_17865 overlap by 4 nucleotides IAI46_17855: IAI46_17855 - helix-turn-helix transcriptional regulator, at 3,762,574 to 3,763,347 _17855 IAI46_17860: IAI46_17860 - DMT family transporter, at 3,763,464 to 3,764,366 _17860 IAI46_17865: IAI46_17865 - sensor histidine kinase N-terminal domain-containing protein, at 3,764,363 to 3,765,781 _17865 Position (kb) 3763 3764 3765Strain fitness (log2 ratio) -2 -1 0 1 2at 3762.483 kb on - strandat 3762.539 kb on - strandat 3762.539 kb on - strandat 3762.548 kb on + strandat 3762.549 kb on - strandat 3762.559 kb on + strandat 3762.630 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.648 kb on + strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.649 kb on - strandat 3762.650 kb on + strandat 3762.685 kb on - strand, within IAI46_17855at 3762.798 kb on - strand, within IAI46_17855at 3762.829 kb on - strand, within IAI46_17855at 3762.829 kb on - strand, within IAI46_17855at 3763.118 kb on + strand, within IAI46_17855at 3763.118 kb on + strand, within IAI46_17855at 3763.119 kb on - strand, within IAI46_17855at 3763.119 kb on - strand, within IAI46_17855at 3763.216 kb on + strand, within IAI46_17855at 3763.240 kb on - strand, within IAI46_17855at 3763.567 kb on - strand, within IAI46_17860at 3763.567 kb on - strand, within IAI46_17860at 3763.567 kb on - strand, within IAI46_17860at 3763.693 kb on - strand, within IAI46_17860at 3763.707 kb on + strand, within IAI46_17860at 3763.708 kb on - strand, within IAI46_17860at 3763.739 kb on + strand, within IAI46_17860at 3763.749 kb on - strand, within IAI46_17860at 3763.749 kb on - strand, within IAI46_17860at 3763.768 kb on + strand, within IAI46_17860at 3763.768 kb on + strand, within IAI46_17860at 3763.820 kb on + strand, within IAI46_17860at 3763.820 kb on + strand, within IAI46_17860at 3763.821 kb on - strand, within IAI46_17860at 3763.821 kb on - strand, within IAI46_17860at 3763.947 kb on + strand, within IAI46_17860at 3764.010 kb on + strand, within IAI46_17860at 3764.010 kb on + strand, within IAI46_17860at 3764.011 kb on - strand, within IAI46_17860at 3764.011 kb on - strand, within IAI46_17860at 3764.042 kb on - strand, within IAI46_17860at 3764.139 kb on + strand, within IAI46_17860at 3764.159 kb on + strand, within IAI46_17860at 3764.159 kb on + strand, within IAI46_17860at 3764.160 kb on - strand, within IAI46_17860at 3764.177 kb on + strand, within IAI46_17860at 3764.213 kb on + strand, within IAI46_17860at 3764.214 kb on - strand, within IAI46_17860at 3764.259 kb on + strand, within IAI46_17860at 3764.259 kb on + strand, within IAI46_17860at 3764.260 kb on - strand, within IAI46_17860at 3764.365 kb on - strandat 3764.372 kb on + strandat 3764.585 kb on + strand, within IAI46_17865at 3764.648 kb on - strand, within IAI46_17865at 3764.868 kb on + strand, within IAI46_17865at 3764.951 kb on - strand, within IAI46_17865at 3765.070 kb on + strand, within IAI46_17865at 3765.071 kb on - strand, within IAI46_17865at 3765.071 kb on - strand, within IAI46_17865at 3765.164 kb on - strand, within IAI46_17865at 3765.190 kb on + strand, within IAI46_17865at 3765.191 kb on - strand, within IAI46_17865at 3765.233 kb on + strand, within IAI46_17865at 3765.288 kb on + strand, within IAI46_17865at 3765.288 kb on + strand, within IAI46_17865

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,762,483 - +0.6
3,762,539 - -0.6
3,762,539 - +0.6
3,762,548 + -1.3
3,762,549 - +0.6
3,762,559 + -0.3
3,762,630 + -2.0
3,762,648 + -0.6
3,762,648 + +0.4
3,762,648 + +0.1
3,762,648 + +0.6
3,762,648 + +0.8
3,762,649 - -0.8
3,762,649 - +0.5
3,762,649 - +0.8
3,762,649 - -1.2
3,762,649 - -0.8
3,762,649 - -0.2
3,762,649 - +0.4
3,762,649 - +0.4
3,762,650 + +0.5
3,762,685 - IAI46_17855 0.14 -0.1
3,762,798 - IAI46_17855 0.29 +0.6
3,762,829 - IAI46_17855 0.33 +0.8
3,762,829 - IAI46_17855 0.33 +0.5
3,763,118 + IAI46_17855 0.70 -0.4
3,763,118 + IAI46_17855 0.70 +1.4
3,763,119 - IAI46_17855 0.70 +0.1
3,763,119 - IAI46_17855 0.70 -0.2
3,763,216 + IAI46_17855 0.83 +0.1
3,763,240 - IAI46_17855 0.86 -0.3
3,763,567 - IAI46_17860 0.11 +0.8
3,763,567 - IAI46_17860 0.11 +0.6
3,763,567 - IAI46_17860 0.11 +0.2
3,763,693 - IAI46_17860 0.25 -0.4
3,763,707 + IAI46_17860 0.27 +0.3
3,763,708 - IAI46_17860 0.27 +0.4
3,763,739 + IAI46_17860 0.30 -0.0
3,763,749 - IAI46_17860 0.32 +1.0
3,763,749 - IAI46_17860 0.32 +0.2
3,763,768 + IAI46_17860 0.34 +0.1
3,763,768 + IAI46_17860 0.34 -1.6
3,763,820 + IAI46_17860 0.39 +1.0
3,763,820 + IAI46_17860 0.39 -0.6
3,763,821 - IAI46_17860 0.40 +1.7
3,763,821 - IAI46_17860 0.40 +0.0
3,763,947 + IAI46_17860 0.53 -0.2
3,764,010 + IAI46_17860 0.60 +0.6
3,764,010 + IAI46_17860 0.60 -0.6
3,764,011 - IAI46_17860 0.61 +1.0
3,764,011 - IAI46_17860 0.61 -0.1
3,764,042 - IAI46_17860 0.64 +0.1
3,764,139 + IAI46_17860 0.75 +1.2
3,764,159 + IAI46_17860 0.77 +0.4
3,764,159 + IAI46_17860 0.77 +0.4
3,764,160 - IAI46_17860 0.77 +1.8
3,764,177 + IAI46_17860 0.79 +0.1
3,764,213 + IAI46_17860 0.83 +0.2
3,764,214 - IAI46_17860 0.83 +0.6
3,764,259 + IAI46_17860 0.88 +0.0
3,764,259 + IAI46_17860 0.88 -0.6
3,764,260 - IAI46_17860 0.88 -0.3
3,764,365 - +0.1
3,764,372 + +0.7
3,764,585 + IAI46_17865 0.16 -0.8
3,764,648 - IAI46_17865 0.20 -0.1
3,764,868 + IAI46_17865 0.36 -0.1
3,764,951 - IAI46_17865 0.41 +0.1
3,765,070 + IAI46_17865 0.50 +1.0
3,765,071 - IAI46_17865 0.50 -0.4
3,765,071 - IAI46_17865 0.50 +0.3
3,765,164 - IAI46_17865 0.56 +0.8
3,765,190 + IAI46_17865 0.58 -0.1
3,765,191 - IAI46_17865 0.58 +0.7
3,765,233 + IAI46_17865 0.61 +0.4
3,765,288 + IAI46_17865 0.65 +1.0
3,765,288 + IAI46_17865 0.65 +0.4

Or see this region's nucleotide sequence