Strain Fitness in Serratia liquefaciens MT49 around IAI46_17790

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17780 and IAI46_17785 are separated by 44 nucleotidesIAI46_17785 and IAI46_17790 are separated by 18 nucleotidesIAI46_17790 and IAI46_17795 overlap by 4 nucleotidesIAI46_17795 and IAI46_17800 are separated by 85 nucleotides IAI46_17780: IAI46_17780 - TIGR01777 family protein, at 3,747,951 to 3,748,865 _17780 IAI46_17785: IAI46_17785 - histidine ABC transporter ATP-binding protein HisP, at 3,748,910 to 3,749,683 _17785 IAI46_17790: IAI46_17790 - ABC transporter permease, at 3,749,702 to 3,750,406 _17790 IAI46_17795: IAI46_17795 - histidine ABC transporter permease HisQ, at 3,750,403 to 3,751,089 _17795 IAI46_17800: IAI46_17800 - histidine ABC transporter substrate-binding protein HisJ, at 3,751,175 to 3,751,957 _17800 Position (kb) 3749 3750 3751Strain fitness (log2 ratio) -2 -1 0 1 2at 3748.873 kb on + strandat 3748.874 kb on - strandat 3748.874 kb on - strandat 3748.874 kb on - strandat 3748.875 kb on + strandat 3749.162 kb on + strand, within IAI46_17785at 3749.163 kb on - strand, within IAI46_17785at 3749.239 kb on - strand, within IAI46_17785at 3749.281 kb on - strand, within IAI46_17785at 3749.447 kb on - strand, within IAI46_17785at 3749.480 kb on - strand, within IAI46_17785at 3749.582 kb on - strand, within IAI46_17785at 3749.582 kb on - strand, within IAI46_17785at 3749.582 kb on - strand, within IAI46_17785at 3749.612 kb on + strandat 3749.640 kb on + strandat 3749.641 kb on - strandat 3749.648 kb on - strandat 3749.671 kb on + strandat 3749.683 kb on + strandat 3749.701 kb on - strandat 3749.710 kb on + strandat 3749.756 kb on + strandat 3749.763 kb on + strandat 3749.778 kb on + strand, within IAI46_17790at 3749.779 kb on - strand, within IAI46_17790at 3749.779 kb on - strand, within IAI46_17790at 3749.779 kb on - strand, within IAI46_17790at 3749.805 kb on + strand, within IAI46_17790at 3749.806 kb on - strand, within IAI46_17790at 3749.817 kb on + strand, within IAI46_17790at 3749.817 kb on + strand, within IAI46_17790at 3749.818 kb on - strand, within IAI46_17790at 3749.915 kb on - strand, within IAI46_17790at 3749.920 kb on - strand, within IAI46_17790at 3749.992 kb on - strand, within IAI46_17790at 3749.992 kb on - strand, within IAI46_17790at 3750.059 kb on - strand, within IAI46_17790at 3750.060 kb on + strand, within IAI46_17790at 3750.159 kb on + strand, within IAI46_17790at 3750.159 kb on + strand, within IAI46_17790at 3750.160 kb on - strand, within IAI46_17790at 3750.171 kb on + strand, within IAI46_17790at 3750.193 kb on - strand, within IAI46_17790at 3750.193 kb on - strand, within IAI46_17790at 3750.216 kb on + strand, within IAI46_17790at 3750.216 kb on + strand, within IAI46_17790at 3750.221 kb on - strand, within IAI46_17790at 3750.222 kb on + strand, within IAI46_17790at 3750.222 kb on + strand, within IAI46_17790at 3750.222 kb on + strand, within IAI46_17790at 3750.223 kb on - strand, within IAI46_17790at 3750.223 kb on - strand, within IAI46_17790at 3750.384 kb on + strandat 3750.385 kb on - strandat 3750.406 kb on + strandat 3750.407 kb on - strandat 3750.407 kb on - strandat 3750.528 kb on - strand, within IAI46_17795at 3750.670 kb on - strand, within IAI46_17795at 3750.670 kb on - strand, within IAI46_17795at 3750.679 kb on + strand, within IAI46_17795at 3750.779 kb on + strand, within IAI46_17795at 3750.780 kb on - strand, within IAI46_17795at 3750.780 kb on - strand, within IAI46_17795at 3750.784 kb on - strand, within IAI46_17795at 3750.901 kb on + strand, within IAI46_17795at 3750.935 kb on + strand, within IAI46_17795at 3750.935 kb on + strand, within IAI46_17795at 3750.936 kb on - strand, within IAI46_17795at 3751.064 kb on - strandat 3751.076 kb on + strandat 3751.077 kb on - strandat 3751.091 kb on + strandat 3751.091 kb on + strandat 3751.092 kb on - strandat 3751.092 kb on - strandat 3751.109 kb on + strandat 3751.110 kb on - strandat 3751.203 kb on + strandat 3751.313 kb on + strand, within IAI46_17800at 3751.359 kb on + strand, within IAI46_17800at 3751.360 kb on - strand, within IAI46_17800

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,748,873 + -1.1
3,748,874 - -0.8
3,748,874 - -0.5
3,748,874 - -0.5
3,748,875 + -0.3
3,749,162 + IAI46_17785 0.33 -0.6
3,749,163 - IAI46_17785 0.33 -0.4
3,749,239 - IAI46_17785 0.43 +1.3
3,749,281 - IAI46_17785 0.48 +0.3
3,749,447 - IAI46_17785 0.69 +0.1
3,749,480 - IAI46_17785 0.74 -1.7
3,749,582 - IAI46_17785 0.87 +0.5
3,749,582 - IAI46_17785 0.87 +0.6
3,749,582 - IAI46_17785 0.87 +0.4
3,749,612 + -1.2
3,749,640 + +0.6
3,749,641 - -0.0
3,749,648 - -0.1
3,749,671 + -1.3
3,749,683 + +0.2
3,749,701 - +0.7
3,749,710 + +1.1
3,749,756 + -0.5
3,749,763 + +1.2
3,749,778 + IAI46_17790 0.11 +0.2
3,749,779 - IAI46_17790 0.11 -1.2
3,749,779 - IAI46_17790 0.11 +0.3
3,749,779 - IAI46_17790 0.11 +0.7
3,749,805 + IAI46_17790 0.15 -0.6
3,749,806 - IAI46_17790 0.15 +0.1
3,749,817 + IAI46_17790 0.16 -1.8
3,749,817 + IAI46_17790 0.16 +0.6
3,749,818 - IAI46_17790 0.16 +0.5
3,749,915 - IAI46_17790 0.30 -0.9
3,749,920 - IAI46_17790 0.31 +1.3
3,749,992 - IAI46_17790 0.41 +0.9
3,749,992 - IAI46_17790 0.41 +1.8
3,750,059 - IAI46_17790 0.51 +0.2
3,750,060 + IAI46_17790 0.51 -0.1
3,750,159 + IAI46_17790 0.65 +0.9
3,750,159 + IAI46_17790 0.65 +1.3
3,750,160 - IAI46_17790 0.65 -0.4
3,750,171 + IAI46_17790 0.67 +0.8
3,750,193 - IAI46_17790 0.70 -0.7
3,750,193 - IAI46_17790 0.70 -0.6
3,750,216 + IAI46_17790 0.73 -0.8
3,750,216 + IAI46_17790 0.73 -1.7
3,750,221 - IAI46_17790 0.74 -0.7
3,750,222 + IAI46_17790 0.74 +0.2
3,750,222 + IAI46_17790 0.74 +1.7
3,750,222 + IAI46_17790 0.74 -1.3
3,750,223 - IAI46_17790 0.74 +0.3
3,750,223 - IAI46_17790 0.74 +0.6
3,750,384 + +1.2
3,750,385 - -0.4
3,750,406 + +0.0
3,750,407 - +0.6
3,750,407 - -0.4
3,750,528 - IAI46_17795 0.18 -0.0
3,750,670 - IAI46_17795 0.39 +0.5
3,750,670 - IAI46_17795 0.39 -0.8
3,750,679 + IAI46_17795 0.40 +1.2
3,750,779 + IAI46_17795 0.55 -0.4
3,750,780 - IAI46_17795 0.55 -0.5
3,750,780 - IAI46_17795 0.55 +0.6
3,750,784 - IAI46_17795 0.55 -0.3
3,750,901 + IAI46_17795 0.72 +0.2
3,750,935 + IAI46_17795 0.77 -1.2
3,750,935 + IAI46_17795 0.77 +0.7
3,750,936 - IAI46_17795 0.78 -0.4
3,751,064 - +0.9
3,751,076 + -0.6
3,751,077 - -0.7
3,751,091 + +1.0
3,751,091 + +0.4
3,751,092 - +0.2
3,751,092 - -0.8
3,751,109 + -0.5
3,751,110 - -0.6
3,751,203 + -0.7
3,751,313 + IAI46_17800 0.18 -0.8
3,751,359 + IAI46_17800 0.23 +0.5
3,751,360 - IAI46_17800 0.24 +0.2

Or see this region's nucleotide sequence