Strain Fitness in Serratia liquefaciens MT49 around IAI46_17130

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17125 and IAI46_17130 are separated by 214 nucleotidesIAI46_17130 and IAI46_17135 are separated by 40 nucleotides IAI46_17125: IAI46_17125 - N-acetylmuramoyl-L-alanine amidase, at 3,591,334 to 3,592,101 _17125 IAI46_17130: IAI46_17130 - helix-turn-helix transcriptional regulator, at 3,592,316 to 3,593,062 _17130 IAI46_17135: IAI46_17135 - SDR family oxidoreductase, at 3,593,103 to 3,594,212 _17135 Position (kb) 3592 3593 3594Strain fitness (log2 ratio) -1 0 1 2at 3591.335 kb on + strandat 3591.402 kb on - strandat 3591.450 kb on - strand, within IAI46_17125at 3591.500 kb on - strand, within IAI46_17125at 3591.522 kb on + strand, within IAI46_17125at 3591.522 kb on + strand, within IAI46_17125at 3591.522 kb on + strand, within IAI46_17125at 3591.523 kb on - strand, within IAI46_17125at 3591.523 kb on - strand, within IAI46_17125at 3591.523 kb on - strand, within IAI46_17125at 3591.542 kb on + strand, within IAI46_17125at 3591.578 kb on + strand, within IAI46_17125at 3591.578 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.933 kb on - strand, within IAI46_17125at 3591.933 kb on - strand, within IAI46_17125at 3591.933 kb on - strand, within IAI46_17125at 3591.962 kb on + strand, within IAI46_17125at 3592.024 kb on - strand, within IAI46_17125at 3592.025 kb on + strandat 3592.025 kb on + strandat 3592.026 kb on - strandat 3592.026 kb on - strandat 3592.085 kb on + strandat 3592.085 kb on + strandat 3592.092 kb on + strandat 3592.104 kb on + strandat 3592.145 kb on - strandat 3592.145 kb on - strandat 3592.157 kb on + strandat 3592.158 kb on - strandat 3592.197 kb on - strandat 3592.333 kb on - strandat 3592.342 kb on + strandat 3592.367 kb on + strandat 3592.745 kb on + strand, within IAI46_17130at 3592.745 kb on + strand, within IAI46_17130at 3592.745 kb on + strand, within IAI46_17130at 3592.745 kb on + strand, within IAI46_17130at 3592.858 kb on + strand, within IAI46_17130at 3592.858 kb on + strand, within IAI46_17130at 3593.060 kb on + strandat 3593.104 kb on + strandat 3593.105 kb on - strandat 3593.105 kb on - strandat 3593.173 kb on + strandat 3593.180 kb on + strandat 3593.236 kb on - strand, within IAI46_17135at 3593.236 kb on - strand, within IAI46_17135at 3593.236 kb on - strand, within IAI46_17135at 3593.260 kb on + strand, within IAI46_17135at 3593.295 kb on - strand, within IAI46_17135at 3593.348 kb on - strand, within IAI46_17135at 3593.348 kb on - strand, within IAI46_17135at 3593.363 kb on - strand, within IAI46_17135at 3593.363 kb on - strand, within IAI46_17135at 3593.413 kb on - strand, within IAI46_17135at 3593.427 kb on - strand, within IAI46_17135at 3593.453 kb on + strand, within IAI46_17135at 3593.454 kb on - strand, within IAI46_17135at 3593.558 kb on + strand, within IAI46_17135at 3593.565 kb on - strand, within IAI46_17135at 3593.565 kb on - strand, within IAI46_17135at 3593.726 kb on - strand, within IAI46_17135at 3593.726 kb on - strand, within IAI46_17135

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,591,335 + +1.8
3,591,402 - -0.7
3,591,450 - IAI46_17125 0.15 +0.7
3,591,500 - IAI46_17125 0.22 +0.6
3,591,522 + IAI46_17125 0.24 -0.0
3,591,522 + IAI46_17125 0.24 +0.3
3,591,522 + IAI46_17125 0.24 +0.3
3,591,523 - IAI46_17125 0.25 -0.3
3,591,523 - IAI46_17125 0.25 -0.6
3,591,523 - IAI46_17125 0.25 +0.7
3,591,542 + IAI46_17125 0.27 -0.8
3,591,578 + IAI46_17125 0.32 +0.5
3,591,578 + IAI46_17125 0.32 -0.5
3,591,932 + IAI46_17125 0.78 +0.0
3,591,932 + IAI46_17125 0.78 +0.8
3,591,932 + IAI46_17125 0.78 +1.3
3,591,932 + IAI46_17125 0.78 -0.8
3,591,933 - IAI46_17125 0.78 -0.3
3,591,933 - IAI46_17125 0.78 +0.6
3,591,933 - IAI46_17125 0.78 -0.5
3,591,962 + IAI46_17125 0.82 +0.0
3,592,024 - IAI46_17125 0.90 +0.9
3,592,025 + +0.2
3,592,025 + -0.1
3,592,026 - +0.2
3,592,026 - +1.0
3,592,085 + -0.7
3,592,085 + +0.8
3,592,092 + -1.5
3,592,104 + +0.5
3,592,145 - -0.5
3,592,145 - +0.6
3,592,157 + -0.2
3,592,158 - +0.3
3,592,197 - +0.8
3,592,333 - -0.6
3,592,342 + -0.6
3,592,367 + -1.0
3,592,745 + IAI46_17130 0.57 +0.3
3,592,745 + IAI46_17130 0.57 +0.2
3,592,745 + IAI46_17130 0.57 -1.1
3,592,745 + IAI46_17130 0.57 -0.3
3,592,858 + IAI46_17130 0.73 +0.8
3,592,858 + IAI46_17130 0.73 +1.3
3,593,060 + +0.2
3,593,104 + -0.3
3,593,105 - +0.7
3,593,105 - +0.4
3,593,173 + -0.5
3,593,180 + -0.3
3,593,236 - IAI46_17135 0.12 -0.6
3,593,236 - IAI46_17135 0.12 +0.7
3,593,236 - IAI46_17135 0.12 +2.0
3,593,260 + IAI46_17135 0.14 +1.1
3,593,295 - IAI46_17135 0.17 -0.4
3,593,348 - IAI46_17135 0.22 -1.3
3,593,348 - IAI46_17135 0.22 -0.6
3,593,363 - IAI46_17135 0.23 -0.5
3,593,363 - IAI46_17135 0.23 -0.4
3,593,413 - IAI46_17135 0.28 +0.1
3,593,427 - IAI46_17135 0.29 -0.0
3,593,453 + IAI46_17135 0.32 +0.6
3,593,454 - IAI46_17135 0.32 +0.1
3,593,558 + IAI46_17135 0.41 +1.1
3,593,565 - IAI46_17135 0.42 -0.2
3,593,565 - IAI46_17135 0.42 -0.2
3,593,726 - IAI46_17135 0.56 -0.5
3,593,726 - IAI46_17135 0.56 +0.2

Or see this region's nucleotide sequence