Strain Fitness in Serratia liquefaciens MT49 around IAI46_17085

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17080 and IAI46_17085 are separated by 230 nucleotidesIAI46_17085 and IAI46_17090 are separated by 490 nucleotidesIAI46_17090 and IAI46_17095 are separated by 113 nucleotides IAI46_17080: IAI46_17080 - branched-chain amino acid ABC transporter permease LivH, at 3,582,581 to 3,583,495 _17080 IAI46_17085: IAI46_17085 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,583,726 to 3,584,844 _17085 IAI46_17090: IAI46_17090 - tRNA-Asn, at 3,585,335 to 3,585,410 _17090 IAI46_17095: IAI46_17095 - PhzF family phenazine biosynthesis protein, at 3,585,524 to 3,586,315 _17095 Position (kb) 3583 3584 3585Strain fitness (log2 ratio) -2 -1 0 1 2at 3582.756 kb on - strand, within IAI46_17080at 3582.756 kb on - strand, within IAI46_17080at 3582.756 kb on - strand, within IAI46_17080at 3582.800 kb on - strand, within IAI46_17080at 3582.829 kb on - strand, within IAI46_17080at 3582.901 kb on + strand, within IAI46_17080at 3582.990 kb on + strand, within IAI46_17080at 3582.990 kb on + strand, within IAI46_17080at 3582.991 kb on - strand, within IAI46_17080at 3582.991 kb on - strand, within IAI46_17080at 3582.991 kb on - strand, within IAI46_17080at 3582.991 kb on - strand, within IAI46_17080at 3583.044 kb on + strand, within IAI46_17080at 3583.143 kb on + strand, within IAI46_17080at 3583.218 kb on + strand, within IAI46_17080at 3583.219 kb on - strand, within IAI46_17080at 3583.225 kb on + strand, within IAI46_17080at 3583.225 kb on + strand, within IAI46_17080at 3583.267 kb on + strand, within IAI46_17080at 3583.350 kb on + strand, within IAI46_17080at 3583.363 kb on + strand, within IAI46_17080at 3583.363 kb on + strand, within IAI46_17080at 3583.363 kb on + strand, within IAI46_17080at 3583.364 kb on - strand, within IAI46_17080at 3583.364 kb on - strand, within IAI46_17080at 3583.364 kb on - strand, within IAI46_17080at 3583.365 kb on + strand, within IAI46_17080at 3583.365 kb on + strand, within IAI46_17080at 3583.366 kb on - strand, within IAI46_17080at 3583.366 kb on - strand, within IAI46_17080at 3583.366 kb on - strand, within IAI46_17080at 3583.366 kb on - strand, within IAI46_17080at 3583.366 kb on - strand, within IAI46_17080at 3583.366 kb on - strand, within IAI46_17080at 3583.420 kb on - strandat 3583.441 kb on - strandat 3583.634 kb on + strandat 3583.635 kb on - strandat 3583.654 kb on + strandat 3583.654 kb on + strandat 3583.655 kb on - strandat 3583.655 kb on - strandat 3583.655 kb on - strandat 3583.663 kb on + strandat 3583.727 kb on + strandat 3583.727 kb on + strandat 3583.727 kb on + strandat 3583.740 kb on - strandat 3583.763 kb on + strandat 3583.937 kb on + strand, within IAI46_17085at 3583.938 kb on - strand, within IAI46_17085at 3583.938 kb on - strand, within IAI46_17085at 3584.252 kb on + strand, within IAI46_17085at 3584.252 kb on + strand, within IAI46_17085at 3584.253 kb on - strand, within IAI46_17085at 3584.253 kb on - strand, within IAI46_17085at 3584.318 kb on + strand, within IAI46_17085at 3584.319 kb on - strand, within IAI46_17085at 3584.375 kb on + strand, within IAI46_17085at 3584.375 kb on + strand, within IAI46_17085at 3584.375 kb on + strand, within IAI46_17085at 3584.376 kb on - strand, within IAI46_17085at 3584.376 kb on - strand, within IAI46_17085at 3584.485 kb on - strand, within IAI46_17085at 3584.502 kb on - strand, within IAI46_17085at 3584.502 kb on - strand, within IAI46_17085at 3584.638 kb on - strand, within IAI46_17085at 3584.717 kb on + strand, within IAI46_17085at 3584.902 kb on + strandat 3584.902 kb on + strandat 3584.903 kb on - strandat 3584.908 kb on + strandat 3584.922 kb on - strandat 3584.922 kb on - strandat 3584.993 kb on - strandat 3584.993 kb on - strandat 3584.993 kb on - strandat 3584.997 kb on - strandat 3585.016 kb on + strandat 3585.016 kb on + strandat 3585.016 kb on + strandat 3585.017 kb on - strandat 3585.017 kb on - strandat 3585.017 kb on - strandat 3585.020 kb on + strandat 3585.020 kb on + strandat 3585.021 kb on - strandat 3585.151 kb on - strandat 3585.198 kb on + strandat 3585.220 kb on + strandat 3585.315 kb on - strandat 3585.498 kb on + strandat 3585.500 kb on + strandat 3585.519 kb on + strandat 3585.519 kb on + strandat 3585.520 kb on - strandat 3585.526 kb on - strandat 3585.526 kb on - strandat 3585.531 kb on - strandat 3585.546 kb on - strandat 3585.760 kb on - strand, within IAI46_17095at 3585.784 kb on + strand, within IAI46_17095at 3585.785 kb on - strand, within IAI46_17095at 3585.785 kb on - strand, within IAI46_17095at 3585.830 kb on + strand, within IAI46_17095

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,582,756 - IAI46_17080 0.19 -0.7
3,582,756 - IAI46_17080 0.19 -0.3
3,582,756 - IAI46_17080 0.19 +0.5
3,582,800 - IAI46_17080 0.24 +1.3
3,582,829 - IAI46_17080 0.27 +0.6
3,582,901 + IAI46_17080 0.35 +0.0
3,582,990 + IAI46_17080 0.45 +0.2
3,582,990 + IAI46_17080 0.45 +0.4
3,582,991 - IAI46_17080 0.45 -0.5
3,582,991 - IAI46_17080 0.45 -0.1
3,582,991 - IAI46_17080 0.45 -2.3
3,582,991 - IAI46_17080 0.45 +1.4
3,583,044 + IAI46_17080 0.51 +0.0
3,583,143 + IAI46_17080 0.61 +0.5
3,583,218 + IAI46_17080 0.70 +0.2
3,583,219 - IAI46_17080 0.70 -0.3
3,583,225 + IAI46_17080 0.70 +0.7
3,583,225 + IAI46_17080 0.70 +0.3
3,583,267 + IAI46_17080 0.75 +0.6
3,583,350 + IAI46_17080 0.84 -0.0
3,583,363 + IAI46_17080 0.85 -1.2
3,583,363 + IAI46_17080 0.85 -0.5
3,583,363 + IAI46_17080 0.85 +0.4
3,583,364 - IAI46_17080 0.86 -0.2
3,583,364 - IAI46_17080 0.86 -0.2
3,583,364 - IAI46_17080 0.86 -0.4
3,583,365 + IAI46_17080 0.86 +2.0
3,583,365 + IAI46_17080 0.86 +0.1
3,583,366 - IAI46_17080 0.86 +0.1
3,583,366 - IAI46_17080 0.86 +0.8
3,583,366 - IAI46_17080 0.86 +2.2
3,583,366 - IAI46_17080 0.86 +1.8
3,583,366 - IAI46_17080 0.86 +0.8
3,583,366 - IAI46_17080 0.86 +0.2
3,583,420 - -1.1
3,583,441 - +0.8
3,583,634 + +0.6
3,583,635 - -1.6
3,583,654 + +0.9
3,583,654 + -0.2
3,583,655 - -1.0
3,583,655 - -0.2
3,583,655 - -0.1
3,583,663 + +0.8
3,583,727 + -0.8
3,583,727 + +0.2
3,583,727 + +0.8
3,583,740 - -0.6
3,583,763 + -0.9
3,583,937 + IAI46_17085 0.19 -0.5
3,583,938 - IAI46_17085 0.19 +1.2
3,583,938 - IAI46_17085 0.19 -0.4
3,584,252 + IAI46_17085 0.47 +0.2
3,584,252 + IAI46_17085 0.47 +0.8
3,584,253 - IAI46_17085 0.47 +0.2
3,584,253 - IAI46_17085 0.47 +0.2
3,584,318 + IAI46_17085 0.53 +1.6
3,584,319 - IAI46_17085 0.53 +2.4
3,584,375 + IAI46_17085 0.58 +0.7
3,584,375 + IAI46_17085 0.58 -0.5
3,584,375 + IAI46_17085 0.58 -0.2
3,584,376 - IAI46_17085 0.58 +0.2
3,584,376 - IAI46_17085 0.58 -0.3
3,584,485 - IAI46_17085 0.68 -2.3
3,584,502 - IAI46_17085 0.69 +0.4
3,584,502 - IAI46_17085 0.69 +0.7
3,584,638 - IAI46_17085 0.82 -0.3
3,584,717 + IAI46_17085 0.89 +0.1
3,584,902 + +0.8
3,584,902 + -1.3
3,584,903 - -0.8
3,584,908 + -0.4
3,584,922 - -0.1
3,584,922 - +1.1
3,584,993 - +0.0
3,584,993 - +0.5
3,584,993 - -0.5
3,584,997 - -0.5
3,585,016 + +0.6
3,585,016 + -0.2
3,585,016 + +0.7
3,585,017 - +0.8
3,585,017 - +0.8
3,585,017 - +0.8
3,585,020 + -0.7
3,585,020 + +0.5
3,585,021 - +0.3
3,585,151 - -0.1
3,585,198 + -0.1
3,585,220 + -0.4
3,585,315 - -0.9
3,585,498 + +0.8
3,585,500 + +0.5
3,585,519 + +1.0
3,585,519 + -0.4
3,585,520 - +0.9
3,585,526 - -0.4
3,585,526 - +1.8
3,585,531 - +0.3
3,585,546 - -0.1
3,585,760 - IAI46_17095 0.30 +0.4
3,585,784 + IAI46_17095 0.33 +0.7
3,585,785 - IAI46_17095 0.33 -0.2
3,585,785 - IAI46_17095 0.33 +0.4
3,585,830 + IAI46_17095 0.39 -1.3

Or see this region's nucleotide sequence