Strain Fitness in Serratia liquefaciens MT49 around IAI46_16825

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16815 and IAI46_16820 are separated by 429 nucleotidesIAI46_16820 and IAI46_16825 are separated by 25 nucleotidesIAI46_16825 and IAI46_16830 are separated by 39 nucleotidesIAI46_16830 and IAI46_16835 are separated by 33 nucleotides IAI46_16815: IAI46_16815 - tail fiber domain-containing protein, at 3,527,096 to 3,528,244 _16815 IAI46_16820: IAI46_16820 - EamA-like transporter family protein, at 3,528,674 to 3,528,802 _16820 IAI46_16825: IAI46_16825 - N-acetyltransferase family protein, at 3,528,828 to 3,529,346 _16825 IAI46_16830: IAI46_16830 - helix-turn-helix transcriptional regulator, at 3,529,386 to 3,529,955 _16830 IAI46_16835: IAI46_16835 - DUF2623 family protein, at 3,529,989 to 3,530,276 _16835 Position (kb) 3528 3529 3530Strain fitness (log2 ratio) -2 -1 0 1 2at 3527.839 kb on + strand, within IAI46_16815at 3527.840 kb on - strand, within IAI46_16815at 3527.844 kb on - strand, within IAI46_16815at 3527.859 kb on + strand, within IAI46_16815at 3527.859 kb on + strand, within IAI46_16815at 3527.860 kb on - strand, within IAI46_16815at 3527.875 kb on + strand, within IAI46_16815at 3527.875 kb on + strand, within IAI46_16815at 3527.876 kb on - strand, within IAI46_16815at 3527.918 kb on - strand, within IAI46_16815at 3527.948 kb on + strand, within IAI46_16815at 3527.949 kb on - strand, within IAI46_16815at 3527.949 kb on - strand, within IAI46_16815at 3527.960 kb on + strand, within IAI46_16815at 3528.054 kb on + strand, within IAI46_16815at 3528.054 kb on + strand, within IAI46_16815at 3528.054 kb on + strand, within IAI46_16815at 3528.215 kb on + strandat 3528.216 kb on - strandat 3528.216 kb on - strandat 3528.248 kb on - strandat 3528.248 kb on - strandat 3528.260 kb on + strandat 3528.279 kb on + strandat 3528.279 kb on + strandat 3528.279 kb on + strandat 3528.279 kb on + strandat 3528.279 kb on + strandat 3528.280 kb on - strandat 3528.280 kb on - strandat 3528.334 kb on + strandat 3528.334 kb on + strandat 3528.334 kb on + strandat 3528.335 kb on - strandat 3528.443 kb on - strandat 3528.476 kb on + strandat 3528.518 kb on + strandat 3528.518 kb on + strandat 3528.534 kb on + strandat 3528.535 kb on - strandat 3528.541 kb on - strandat 3528.589 kb on + strandat 3528.589 kb on + strandat 3528.590 kb on - strandat 3528.590 kb on - strandat 3528.607 kb on + strandat 3528.621 kb on + strandat 3528.633 kb on + strandat 3528.728 kb on - strand, within IAI46_16820at 3528.796 kb on + strandat 3528.947 kb on + strand, within IAI46_16825at 3529.053 kb on - strand, within IAI46_16825at 3529.053 kb on - strand, within IAI46_16825at 3529.088 kb on - strand, within IAI46_16825at 3529.088 kb on - strand, within IAI46_16825at 3529.088 kb on - strand, within IAI46_16825at 3529.088 kb on - strand, within IAI46_16825at 3529.150 kb on + strand, within IAI46_16825at 3529.151 kb on - strand, within IAI46_16825at 3529.250 kb on + strand, within IAI46_16825at 3529.294 kb on + strand, within IAI46_16825at 3529.294 kb on + strand, within IAI46_16825at 3529.294 kb on + strand, within IAI46_16825at 3529.295 kb on - strandat 3529.295 kb on - strandat 3529.295 kb on - strandat 3529.325 kb on + strandat 3529.341 kb on - strandat 3529.511 kb on + strand, within IAI46_16830at 3529.511 kb on + strand, within IAI46_16830at 3529.532 kb on + strand, within IAI46_16830at 3529.634 kb on + strand, within IAI46_16830at 3529.675 kb on - strand, within IAI46_16830at 3529.926 kb on + strandat 3529.926 kb on + strandat 3529.946 kb on + strandat 3529.947 kb on - strandat 3529.947 kb on - strandat 3529.985 kb on - strandat 3530.020 kb on + strand, within IAI46_16835at 3530.086 kb on + strand, within IAI46_16835at 3530.170 kb on - strand, within IAI46_16835at 3530.186 kb on - strand, within IAI46_16835at 3530.278 kb on + strandat 3530.278 kb on + strandat 3530.278 kb on + strandat 3530.345 kb on + strandat 3530.345 kb on + strandat 3530.345 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,527,839 + IAI46_16815 0.65 -0.1
3,527,840 - IAI46_16815 0.65 +0.1
3,527,844 - IAI46_16815 0.65 +0.9
3,527,859 + IAI46_16815 0.66 -0.3
3,527,859 + IAI46_16815 0.66 -0.6
3,527,860 - IAI46_16815 0.66 -0.2
3,527,875 + IAI46_16815 0.68 +0.2
3,527,875 + IAI46_16815 0.68 +1.8
3,527,876 - IAI46_16815 0.68 +0.5
3,527,918 - IAI46_16815 0.72 +0.1
3,527,948 + IAI46_16815 0.74 +1.0
3,527,949 - IAI46_16815 0.74 -0.0
3,527,949 - IAI46_16815 0.74 +0.8
3,527,960 + IAI46_16815 0.75 +0.2
3,528,054 + IAI46_16815 0.83 -0.4
3,528,054 + IAI46_16815 0.83 -0.2
3,528,054 + IAI46_16815 0.83 -1.7
3,528,215 + +0.8
3,528,216 - -0.0
3,528,216 - -1.5
3,528,248 - +0.9
3,528,248 - -0.9
3,528,260 + +0.7
3,528,279 + +0.8
3,528,279 + -1.2
3,528,279 + -0.4
3,528,279 + +0.8
3,528,279 + -0.2
3,528,280 - -0.7
3,528,280 - +0.3
3,528,334 + +0.5
3,528,334 + -0.5
3,528,334 + +0.0
3,528,335 - +0.8
3,528,443 - +0.4
3,528,476 + -0.5
3,528,518 + +0.5
3,528,518 + +0.3
3,528,534 + +0.9
3,528,535 - -0.1
3,528,541 - +0.0
3,528,589 + +0.9
3,528,589 + +1.0
3,528,590 - +0.7
3,528,590 - +0.4
3,528,607 + +0.1
3,528,621 + -0.6
3,528,633 + -0.0
3,528,728 - IAI46_16820 0.42 +0.2
3,528,796 + +0.1
3,528,947 + IAI46_16825 0.23 +0.0
3,529,053 - IAI46_16825 0.43 +0.8
3,529,053 - IAI46_16825 0.43 -0.7
3,529,088 - IAI46_16825 0.50 -1.6
3,529,088 - IAI46_16825 0.50 +0.6
3,529,088 - IAI46_16825 0.50 +1.8
3,529,088 - IAI46_16825 0.50 +0.1
3,529,150 + IAI46_16825 0.62 +0.1
3,529,151 - IAI46_16825 0.62 +0.9
3,529,250 + IAI46_16825 0.81 -0.2
3,529,294 + IAI46_16825 0.90 +0.4
3,529,294 + IAI46_16825 0.90 +0.8
3,529,294 + IAI46_16825 0.90 +0.7
3,529,295 - +0.1
3,529,295 - -0.5
3,529,295 - +0.4
3,529,325 + +0.6
3,529,341 - -2.4
3,529,511 + IAI46_16830 0.22 +0.1
3,529,511 + IAI46_16830 0.22 +0.2
3,529,532 + IAI46_16830 0.26 -0.2
3,529,634 + IAI46_16830 0.44 +0.6
3,529,675 - IAI46_16830 0.51 +0.4
3,529,926 + -0.7
3,529,926 + +0.0
3,529,946 + +0.9
3,529,947 - +0.3
3,529,947 - -0.4
3,529,985 - -0.2
3,530,020 + IAI46_16835 0.11 -1.2
3,530,086 + IAI46_16835 0.34 -0.4
3,530,170 - IAI46_16835 0.63 +0.8
3,530,186 - IAI46_16835 0.68 +0.1
3,530,278 + -0.5
3,530,278 + +0.1
3,530,278 + -0.7
3,530,345 + +0.4
3,530,345 + -0.2
3,530,345 + +0.2

Or see this region's nucleotide sequence