Strain Fitness in Serratia liquefaciens MT49 around IAI46_16505

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16500 and IAI46_16505 are separated by 200 nucleotidesIAI46_16505 and IAI46_16510 are separated by 3 nucleotides IAI46_16500: IAI46_16500 - alpha-glucosidase/alpha-galactosidase, at 3,456,404 to 3,457,711 _16500 IAI46_16505: IAI46_16505 - AraC family transcriptional regulator, at 3,457,912 to 3,458,769 _16505 IAI46_16510: IAI46_16510 - EmmdR/YeeO family multidrug/toxin efflux MATE transporter, at 3,458,773 to 3,460,236 _16510 Position (kb) 3457 3458 3459Strain fitness (log2 ratio) -2 -1 0 1at 3456.922 kb on + strand, within IAI46_16500at 3456.939 kb on + strand, within IAI46_16500at 3456.950 kb on - strand, within IAI46_16500at 3456.950 kb on - strand, within IAI46_16500at 3456.972 kb on + strand, within IAI46_16500at 3456.972 kb on + strand, within IAI46_16500at 3456.972 kb on + strand, within IAI46_16500at 3456.972 kb on + strand, within IAI46_16500at 3457.004 kb on + strand, within IAI46_16500at 3457.196 kb on + strand, within IAI46_16500at 3457.196 kb on + strand, within IAI46_16500at 3457.197 kb on - strand, within IAI46_16500at 3457.263 kb on + strand, within IAI46_16500at 3457.264 kb on - strand, within IAI46_16500at 3457.334 kb on - strand, within IAI46_16500at 3457.467 kb on + strand, within IAI46_16500at 3457.468 kb on - strand, within IAI46_16500at 3457.468 kb on - strand, within IAI46_16500at 3457.512 kb on + strand, within IAI46_16500at 3457.513 kb on - strand, within IAI46_16500at 3457.543 kb on + strand, within IAI46_16500at 3457.556 kb on - strand, within IAI46_16500at 3457.556 kb on - strand, within IAI46_16500at 3457.605 kb on + strandat 3457.694 kb on - strandat 3457.705 kb on + strandat 3457.706 kb on - strandat 3457.715 kb on - strandat 3457.741 kb on - strandat 3457.775 kb on - strandat 3457.775 kb on - strandat 3457.781 kb on - strandat 3457.873 kb on - strandat 3457.880 kb on + strandat 3457.881 kb on - strandat 3457.881 kb on - strandat 3457.917 kb on + strandat 3457.918 kb on - strandat 3457.926 kb on + strandat 3457.927 kb on - strandat 3458.027 kb on - strand, within IAI46_16505at 3458.027 kb on - strand, within IAI46_16505at 3458.030 kb on + strand, within IAI46_16505at 3458.038 kb on + strand, within IAI46_16505at 3458.133 kb on + strand, within IAI46_16505at 3458.133 kb on + strand, within IAI46_16505at 3458.134 kb on - strand, within IAI46_16505at 3458.134 kb on - strand, within IAI46_16505at 3458.138 kb on - strand, within IAI46_16505at 3458.167 kb on + strand, within IAI46_16505at 3458.167 kb on + strand, within IAI46_16505at 3458.168 kb on - strand, within IAI46_16505at 3458.168 kb on - strand, within IAI46_16505at 3458.168 kb on - strand, within IAI46_16505at 3458.170 kb on - strand, within IAI46_16505at 3458.170 kb on - strand, within IAI46_16505at 3458.170 kb on - strand, within IAI46_16505at 3458.170 kb on - strand, within IAI46_16505at 3458.170 kb on - strand, within IAI46_16505at 3458.170 kb on - strand, within IAI46_16505at 3458.246 kb on - strand, within IAI46_16505at 3458.348 kb on - strand, within IAI46_16505at 3458.456 kb on - strand, within IAI46_16505at 3458.513 kb on - strand, within IAI46_16505at 3458.539 kb on + strand, within IAI46_16505at 3458.539 kb on + strand, within IAI46_16505at 3458.540 kb on - strand, within IAI46_16505at 3458.608 kb on - strand, within IAI46_16505at 3458.648 kb on - strand, within IAI46_16505at 3458.754 kb on - strandat 3458.775 kb on - strandat 3458.824 kb on + strandat 3458.862 kb on + strandat 3458.863 kb on - strandat 3458.956 kb on - strand, within IAI46_16510at 3458.956 kb on - strand, within IAI46_16510at 3458.956 kb on - strand, within IAI46_16510at 3458.956 kb on - strand, within IAI46_16510at 3459.075 kb on + strand, within IAI46_16510at 3459.076 kb on - strand, within IAI46_16510at 3459.106 kb on + strand, within IAI46_16510at 3459.244 kb on + strand, within IAI46_16510at 3459.245 kb on - strand, within IAI46_16510at 3459.276 kb on + strand, within IAI46_16510at 3459.441 kb on + strand, within IAI46_16510at 3459.442 kb on - strand, within IAI46_16510at 3459.445 kb on + strand, within IAI46_16510at 3459.492 kb on - strand, within IAI46_16510at 3459.542 kb on + strand, within IAI46_16510at 3459.543 kb on - strand, within IAI46_16510at 3459.641 kb on - strand, within IAI46_16510at 3459.657 kb on + strand, within IAI46_16510at 3459.666 kb on + strand, within IAI46_16510at 3459.667 kb on - strand, within IAI46_16510

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,456,922 + IAI46_16500 0.40 -0.4
3,456,939 + IAI46_16500 0.41 +1.1
3,456,950 - IAI46_16500 0.42 -0.2
3,456,950 - IAI46_16500 0.42 -0.3
3,456,972 + IAI46_16500 0.43 +0.2
3,456,972 + IAI46_16500 0.43 +0.5
3,456,972 + IAI46_16500 0.43 -0.1
3,456,972 + IAI46_16500 0.43 -0.2
3,457,004 + IAI46_16500 0.46 -0.3
3,457,196 + IAI46_16500 0.61 -0.8
3,457,196 + IAI46_16500 0.61 +1.0
3,457,197 - IAI46_16500 0.61 -2.1
3,457,263 + IAI46_16500 0.66 +0.3
3,457,264 - IAI46_16500 0.66 +1.6
3,457,334 - IAI46_16500 0.71 +0.1
3,457,467 + IAI46_16500 0.81 +0.0
3,457,468 - IAI46_16500 0.81 -1.0
3,457,468 - IAI46_16500 0.81 +0.4
3,457,512 + IAI46_16500 0.85 +0.9
3,457,513 - IAI46_16500 0.85 -1.4
3,457,543 + IAI46_16500 0.87 +0.8
3,457,556 - IAI46_16500 0.88 -0.6
3,457,556 - IAI46_16500 0.88 +1.1
3,457,605 + +0.4
3,457,694 - +0.4
3,457,705 + +1.7
3,457,706 - -0.3
3,457,715 - -2.0
3,457,741 - +0.2
3,457,775 - -0.4
3,457,775 - -0.1
3,457,781 - -0.3
3,457,873 - +0.4
3,457,880 + -0.9
3,457,881 - +0.0
3,457,881 - -0.1
3,457,917 + +0.8
3,457,918 - +1.2
3,457,926 + +0.4
3,457,927 - +0.1
3,458,027 - IAI46_16505 0.13 +0.1
3,458,027 - IAI46_16505 0.13 +1.0
3,458,030 + IAI46_16505 0.14 -0.0
3,458,038 + IAI46_16505 0.15 +0.6
3,458,133 + IAI46_16505 0.26 +1.4
3,458,133 + IAI46_16505 0.26 -0.5
3,458,134 - IAI46_16505 0.26 +1.0
3,458,134 - IAI46_16505 0.26 -0.4
3,458,138 - IAI46_16505 0.26 +0.1
3,458,167 + IAI46_16505 0.30 -1.4
3,458,167 + IAI46_16505 0.30 -0.8
3,458,168 - IAI46_16505 0.30 -0.2
3,458,168 - IAI46_16505 0.30 +0.9
3,458,168 - IAI46_16505 0.30 -0.2
3,458,170 - IAI46_16505 0.30 -1.9
3,458,170 - IAI46_16505 0.30 +0.3
3,458,170 - IAI46_16505 0.30 +0.1
3,458,170 - IAI46_16505 0.30 -0.6
3,458,170 - IAI46_16505 0.30 -0.6
3,458,170 - IAI46_16505 0.30 -0.3
3,458,246 - IAI46_16505 0.39 +0.5
3,458,348 - IAI46_16505 0.51 -0.4
3,458,456 - IAI46_16505 0.63 +0.5
3,458,513 - IAI46_16505 0.70 -1.1
3,458,539 + IAI46_16505 0.73 -0.3
3,458,539 + IAI46_16505 0.73 +0.2
3,458,540 - IAI46_16505 0.73 -0.3
3,458,608 - IAI46_16505 0.81 -0.3
3,458,648 - IAI46_16505 0.86 -1.0
3,458,754 - +0.7
3,458,775 - +0.4
3,458,824 + +0.7
3,458,862 + -0.3
3,458,863 - -1.1
3,458,956 - IAI46_16510 0.12 +0.7
3,458,956 - IAI46_16510 0.12 -1.2
3,458,956 - IAI46_16510 0.12 -1.0
3,458,956 - IAI46_16510 0.12 -0.8
3,459,075 + IAI46_16510 0.21 +1.3
3,459,076 - IAI46_16510 0.21 +0.1
3,459,106 + IAI46_16510 0.23 -0.1
3,459,244 + IAI46_16510 0.32 +0.3
3,459,245 - IAI46_16510 0.32 -0.4
3,459,276 + IAI46_16510 0.34 +1.0
3,459,441 + IAI46_16510 0.46 +0.9
3,459,442 - IAI46_16510 0.46 +0.6
3,459,445 + IAI46_16510 0.46 -0.9
3,459,492 - IAI46_16510 0.49 +0.8
3,459,542 + IAI46_16510 0.53 -1.1
3,459,543 - IAI46_16510 0.53 +0.7
3,459,641 - IAI46_16510 0.59 -0.2
3,459,657 + IAI46_16510 0.60 -0.1
3,459,666 + IAI46_16510 0.61 -0.2
3,459,667 - IAI46_16510 0.61 +0.9

Or see this region's nucleotide sequence