Strain Fitness in Serratia liquefaciens MT49 around IAI46_16400

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16395 and IAI46_16400 are separated by 15 nucleotidesIAI46_16400 and IAI46_16405 are separated by 78 nucleotides IAI46_16395: IAI46_16395 - 3-oxoadipyl-CoA thiolase, at 3,434,476 to 3,435,681 _16395 IAI46_16400: IAI46_16400 - phenylacetate--CoA ligase, at 3,435,697 to 3,437,004 _16400 IAI46_16405: IAI46_16405 - phenylacetic acid degradation operon negative regulatory protein PaaX, at 3,437,083 to 3,438,021 _16405 Position (kb) 3435 3436 3437 3438Strain fitness (log2 ratio) -2 -1 0 1at 3434.896 kb on + strand, within IAI46_16395at 3435.162 kb on + strand, within IAI46_16395at 3435.365 kb on + strand, within IAI46_16395at 3435.365 kb on + strand, within IAI46_16395at 3435.366 kb on - strand, within IAI46_16395at 3435.366 kb on - strand, within IAI46_16395at 3435.366 kb on - strand, within IAI46_16395at 3435.696 kb on + strandat 3435.696 kb on + strandat 3435.697 kb on - strandat 3435.697 kb on - strandat 3435.697 kb on - strandat 3435.799 kb on + strandat 3435.799 kb on + strandat 3435.818 kb on - strandat 3435.894 kb on + strand, within IAI46_16400at 3435.894 kb on + strand, within IAI46_16400at 3435.894 kb on + strand, within IAI46_16400at 3435.894 kb on + strand, within IAI46_16400at 3435.966 kb on + strand, within IAI46_16400at 3436.012 kb on + strand, within IAI46_16400at 3436.012 kb on + strand, within IAI46_16400at 3436.013 kb on - strand, within IAI46_16400at 3436.032 kb on + strand, within IAI46_16400at 3436.033 kb on - strand, within IAI46_16400at 3436.033 kb on - strand, within IAI46_16400at 3436.259 kb on - strand, within IAI46_16400at 3436.259 kb on - strand, within IAI46_16400at 3436.407 kb on + strand, within IAI46_16400at 3436.411 kb on + strand, within IAI46_16400at 3436.411 kb on + strand, within IAI46_16400at 3436.412 kb on - strand, within IAI46_16400at 3436.771 kb on + strand, within IAI46_16400at 3436.771 kb on + strand, within IAI46_16400at 3436.771 kb on + strand, within IAI46_16400at 3436.772 kb on - strand, within IAI46_16400at 3436.807 kb on - strand, within IAI46_16400at 3437.044 kb on + strandat 3437.044 kb on + strandat 3437.118 kb on + strandat 3437.119 kb on - strandat 3437.119 kb on - strandat 3437.165 kb on - strandat 3437.326 kb on + strand, within IAI46_16405at 3437.326 kb on + strand, within IAI46_16405at 3437.327 kb on - strand, within IAI46_16405at 3437.346 kb on + strand, within IAI46_16405at 3437.498 kb on + strand, within IAI46_16405at 3437.588 kb on - strand, within IAI46_16405at 3437.588 kb on - strand, within IAI46_16405at 3437.609 kb on - strand, within IAI46_16405at 3437.609 kb on - strand, within IAI46_16405at 3437.772 kb on + strand, within IAI46_16405at 3437.772 kb on + strand, within IAI46_16405at 3437.777 kb on + strand, within IAI46_16405at 3437.777 kb on + strand, within IAI46_16405at 3437.777 kb on + strand, within IAI46_16405at 3437.778 kb on - strand, within IAI46_16405at 3437.778 kb on - strand, within IAI46_16405at 3437.778 kb on - strand, within IAI46_16405at 3437.780 kb on + strand, within IAI46_16405at 3437.781 kb on - strand, within IAI46_16405at 3437.781 kb on - strand, within IAI46_16405at 3437.781 kb on - strand, within IAI46_16405at 3437.781 kb on - strand, within IAI46_16405at 3437.887 kb on - strand, within IAI46_16405at 3437.890 kb on + strand, within IAI46_16405at 3437.921 kb on - strand, within IAI46_16405

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,434,896 + IAI46_16395 0.35 +1.7
3,435,162 + IAI46_16395 0.57 +0.1
3,435,365 + IAI46_16395 0.74 -0.7
3,435,365 + IAI46_16395 0.74 +0.0
3,435,366 - IAI46_16395 0.74 -0.3
3,435,366 - IAI46_16395 0.74 +0.2
3,435,366 - IAI46_16395 0.74 +0.5
3,435,696 + +0.6
3,435,696 + -0.5
3,435,697 - +0.1
3,435,697 - -1.1
3,435,697 - +1.0
3,435,799 + +0.1
3,435,799 + +0.4
3,435,818 - -0.3
3,435,894 + IAI46_16400 0.15 -1.3
3,435,894 + IAI46_16400 0.15 -0.2
3,435,894 + IAI46_16400 0.15 -0.2
3,435,894 + IAI46_16400 0.15 +0.4
3,435,966 + IAI46_16400 0.21 +0.0
3,436,012 + IAI46_16400 0.24 +1.1
3,436,012 + IAI46_16400 0.24 +0.2
3,436,013 - IAI46_16400 0.24 +0.7
3,436,032 + IAI46_16400 0.26 +1.1
3,436,033 - IAI46_16400 0.26 +0.2
3,436,033 - IAI46_16400 0.26 +0.9
3,436,259 - IAI46_16400 0.43 -0.4
3,436,259 - IAI46_16400 0.43 +0.7
3,436,407 + IAI46_16400 0.54 +0.0
3,436,411 + IAI46_16400 0.55 -1.1
3,436,411 + IAI46_16400 0.55 +0.3
3,436,412 - IAI46_16400 0.55 +0.4
3,436,771 + IAI46_16400 0.82 -0.5
3,436,771 + IAI46_16400 0.82 +0.2
3,436,771 + IAI46_16400 0.82 -1.3
3,436,772 - IAI46_16400 0.82 +1.0
3,436,807 - IAI46_16400 0.85 -2.1
3,437,044 + -0.2
3,437,044 + +0.3
3,437,118 + +0.9
3,437,119 - +0.9
3,437,119 - +0.0
3,437,165 - -1.0
3,437,326 + IAI46_16405 0.26 -0.4
3,437,326 + IAI46_16405 0.26 -0.4
3,437,327 - IAI46_16405 0.26 +0.1
3,437,346 + IAI46_16405 0.28 -1.5
3,437,498 + IAI46_16405 0.44 +1.3
3,437,588 - IAI46_16405 0.54 +0.1
3,437,588 - IAI46_16405 0.54 +1.7
3,437,609 - IAI46_16405 0.56 +0.4
3,437,609 - IAI46_16405 0.56 -0.3
3,437,772 + IAI46_16405 0.73 -0.3
3,437,772 + IAI46_16405 0.73 +0.5
3,437,777 + IAI46_16405 0.74 -0.2
3,437,777 + IAI46_16405 0.74 +0.5
3,437,777 + IAI46_16405 0.74 +0.1
3,437,778 - IAI46_16405 0.74 +0.6
3,437,778 - IAI46_16405 0.74 -0.3
3,437,778 - IAI46_16405 0.74 +0.1
3,437,780 + IAI46_16405 0.74 -0.4
3,437,781 - IAI46_16405 0.74 -0.0
3,437,781 - IAI46_16405 0.74 +1.1
3,437,781 - IAI46_16405 0.74 +1.1
3,437,781 - IAI46_16405 0.74 +0.9
3,437,887 - IAI46_16405 0.86 -2.2
3,437,890 + IAI46_16405 0.86 +0.4
3,437,921 - IAI46_16405 0.89 +0.0

Or see this region's nucleotide sequence