Strain Fitness in Serratia liquefaciens MT49 around IAI46_16370

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16360 and IAI46_16365 are separated by 9 nucleotidesIAI46_16365 and IAI46_16370 are separated by 14 nucleotidesIAI46_16370 and IAI46_16375 are separated by 9 nucleotidesIAI46_16375 and IAI46_16380 are separated by 3 nucleotides IAI46_16360: IAI46_16360 - phenylacetate-CoA oxygenase subunit PaaC, at 3,428,597 to 3,429,358 _16360 IAI46_16365: IAI46_16365 - phenylacetate-CoA oxygenase subunit PaaJ, at 3,429,368 to 3,429,865 _16365 IAI46_16370: IAI46_16370 - phenylacetate-CoA oxygenase/reductase subunit PaaK, at 3,429,880 to 3,430,938 _16370 IAI46_16375: IAI46_16375 - 2,3-dehydroadipyl-CoA hydratase, at 3,430,948 to 3,431,721 _16375 IAI46_16380: IAI46_16380 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 3,431,725 to 3,432,516 _16380 Position (kb) 3429 3430 3431Strain fitness (log2 ratio) -1 0 1at 3428.918 kb on + strand, within IAI46_16360at 3429.005 kb on + strand, within IAI46_16360at 3429.367 kb on + strandat 3429.530 kb on + strand, within IAI46_16365at 3429.675 kb on + strand, within IAI46_16365at 3429.710 kb on - strand, within IAI46_16365at 3429.864 kb on - strandat 3429.864 kb on - strandat 3429.938 kb on + strandat 3429.939 kb on - strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.943 kb on - strandat 3429.943 kb on - strandat 3429.943 kb on - strandat 3429.985 kb on + strandat 3430.011 kb on - strand, within IAI46_16370at 3430.223 kb on - strand, within IAI46_16370at 3430.508 kb on - strand, within IAI46_16370at 3430.508 kb on - strand, within IAI46_16370at 3430.508 kb on - strand, within IAI46_16370at 3430.521 kb on + strand, within IAI46_16370at 3430.521 kb on + strand, within IAI46_16370at 3430.521 kb on + strand, within IAI46_16370at 3430.611 kb on + strand, within IAI46_16370at 3430.612 kb on - strand, within IAI46_16370at 3430.768 kb on + strand, within IAI46_16370at 3430.812 kb on - strand, within IAI46_16370at 3430.843 kb on + strandat 3430.876 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.881 kb on - strandat 3430.934 kb on + strandat 3430.935 kb on - strandat 3430.936 kb on + strandat 3430.936 kb on + strandat 3430.937 kb on - strandat 3430.937 kb on - strandat 3431.059 kb on + strand, within IAI46_16375at 3431.102 kb on + strand, within IAI46_16375at 3431.229 kb on + strand, within IAI46_16375at 3431.707 kb on + strandat 3431.802 kb on + strandat 3431.802 kb on + strandat 3431.870 kb on + strand, within IAI46_16380at 3431.870 kb on + strand, within IAI46_16380

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,428,918 + IAI46_16360 0.42 -0.5
3,429,005 + IAI46_16360 0.54 -1.5
3,429,367 + +0.2
3,429,530 + IAI46_16365 0.33 -0.1
3,429,675 + IAI46_16365 0.62 -0.1
3,429,710 - IAI46_16365 0.69 +0.1
3,429,864 - +0.8
3,429,864 - -0.9
3,429,938 + -1.3
3,429,939 - +0.9
3,429,942 + -0.7
3,429,942 + -0.6
3,429,942 + +0.7
3,429,942 + +0.2
3,429,942 + +0.3
3,429,943 - -0.2
3,429,943 - +1.5
3,429,943 - -1.6
3,429,985 + +0.8
3,430,011 - IAI46_16370 0.12 -0.5
3,430,223 - IAI46_16370 0.32 -1.2
3,430,508 - IAI46_16370 0.59 -1.2
3,430,508 - IAI46_16370 0.59 -1.0
3,430,508 - IAI46_16370 0.59 +0.1
3,430,521 + IAI46_16370 0.61 -0.0
3,430,521 + IAI46_16370 0.61 +0.8
3,430,521 + IAI46_16370 0.61 +0.1
3,430,611 + IAI46_16370 0.69 +0.7
3,430,612 - IAI46_16370 0.69 +0.3
3,430,768 + IAI46_16370 0.84 +0.2
3,430,812 - IAI46_16370 0.88 +0.9
3,430,843 + +0.9
3,430,876 + -0.2
3,430,880 + -0.6
3,430,880 + +0.6
3,430,881 - +0.6
3,430,934 + +0.6
3,430,935 - +1.7
3,430,936 + +0.3
3,430,936 + +0.2
3,430,937 - -0.1
3,430,937 - +1.2
3,431,059 + IAI46_16375 0.14 +0.0
3,431,102 + IAI46_16375 0.20 -0.2
3,431,229 + IAI46_16375 0.36 -1.0
3,431,707 + +0.2
3,431,802 + +0.1
3,431,802 + -0.4
3,431,870 + IAI46_16380 0.18 +0.2
3,431,870 + IAI46_16380 0.18 +0.8

Or see this region's nucleotide sequence