Strain Fitness in Serratia liquefaciens MT49 around IAI46_14590

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_14585 and IAI46_14590 are separated by 106 nucleotidesIAI46_14590 and IAI46_14595 are separated by 67 nucleotides IAI46_14585: IAI46_14585 - pyruvate kinase, at 3,091,841 to 3,093,283 _14585 IAI46_14590: IAI46_14590 - leucine-rich repeat domain-containing protein, at 3,093,390 to 3,094,274 _14590 IAI46_14595: IAI46_14595 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 3,094,342 to 3,095,310 _14595 Position (kb) 3093 3094 3095Strain fitness (log2 ratio) -1 0 1at 3092.456 kb on + strand, within IAI46_14585at 3092.575 kb on - strand, within IAI46_14585at 3092.907 kb on + strand, within IAI46_14585at 3092.977 kb on + strand, within IAI46_14585at 3093.133 kb on + strand, within IAI46_14585at 3093.181 kb on + strandat 3093.266 kb on - strandat 3093.282 kb on - strandat 3093.471 kb on - strandat 3093.471 kb on - strandat 3093.478 kb on + strandat 3093.510 kb on + strand, within IAI46_14590at 3093.614 kb on - strand, within IAI46_14590at 3093.705 kb on + strand, within IAI46_14590at 3093.709 kb on + strand, within IAI46_14590at 3093.710 kb on - strand, within IAI46_14590at 3093.712 kb on - strand, within IAI46_14590at 3093.791 kb on + strand, within IAI46_14590at 3093.792 kb on - strand, within IAI46_14590at 3093.930 kb on - strand, within IAI46_14590at 3094.085 kb on - strand, within IAI46_14590at 3094.268 kb on + strandat 3094.343 kb on + strandat 3094.352 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
3,092,456 + IAI46_14585 0.43 -0.3
3,092,575 - IAI46_14585 0.51 -0.4
3,092,907 + IAI46_14585 0.74 -0.2
3,092,977 + IAI46_14585 0.79 -1.3
3,093,133 + IAI46_14585 0.90 -0.9
3,093,181 + +0.5
3,093,266 - -0.4
3,093,282 - +0.4
3,093,471 - -0.8
3,093,471 - +0.4
3,093,478 + +0.6
3,093,510 + IAI46_14590 0.14 -0.7
3,093,614 - IAI46_14590 0.25 -0.4
3,093,705 + IAI46_14590 0.36 +0.5
3,093,709 + IAI46_14590 0.36 -0.2
3,093,710 - IAI46_14590 0.36 +1.0
3,093,712 - IAI46_14590 0.36 +0.1
3,093,791 + IAI46_14590 0.45 -0.6
3,093,792 - IAI46_14590 0.45 -1.6
3,093,930 - IAI46_14590 0.61 +1.6
3,094,085 - IAI46_14590 0.79 +0.2
3,094,268 + -0.7
3,094,343 + +0.3
3,094,352 - +0.4

Or see this region's nucleotide sequence