Strain Fitness in Serratia liquefaciens MT49 around IAI46_14425

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_14415 and IAI46_14420 are separated by 170 nucleotidesIAI46_14420 and IAI46_14425 are separated by 318 nucleotidesIAI46_14425 and IAI46_14430 are separated by 4 nucleotidesIAI46_14430 and IAI46_14435 are separated by 17 nucleotides IAI46_14415: IAI46_14415 - hypothetical protein, at 3,058,006 to 3,058,299 _14415 IAI46_14420: IAI46_14420 - hypothetical protein, at 3,058,470 to 3,058,952 _14420 IAI46_14425: IAI46_14425 - ABC transporter ATP-binding protein, at 3,059,271 to 3,060,080 _14425 IAI46_14430: IAI46_14430 - ABC transporter ATP-binding protein, at 3,060,085 to 3,060,876 _14430 IAI46_14435: IAI46_14435 - ABC transporter substrate-binding protein, at 3,060,894 to 3,062,402 _14435 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -1 0 1at 3058.533 kb on + strand, within IAI46_14420at 3058.534 kb on - strand, within IAI46_14420at 3058.534 kb on - strand, within IAI46_14420at 3058.536 kb on - strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.538 kb on - strand, within IAI46_14420at 3058.538 kb on - strand, within IAI46_14420at 3058.539 kb on + strand, within IAI46_14420at 3058.539 kb on + strand, within IAI46_14420at 3058.540 kb on - strand, within IAI46_14420at 3058.540 kb on - strand, within IAI46_14420at 3058.582 kb on + strand, within IAI46_14420at 3058.583 kb on - strand, within IAI46_14420at 3058.584 kb on + strand, within IAI46_14420at 3058.655 kb on + strand, within IAI46_14420at 3058.655 kb on + strand, within IAI46_14420at 3058.656 kb on - strand, within IAI46_14420at 3058.686 kb on + strand, within IAI46_14420at 3058.710 kb on + strand, within IAI46_14420at 3058.710 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.714 kb on - strand, within IAI46_14420at 3058.714 kb on - strand, within IAI46_14420at 3058.927 kb on + strandat 3058.941 kb on + strandat 3058.964 kb on + strandat 3058.964 kb on + strandat 3059.015 kb on + strandat 3059.015 kb on + strandat 3059.035 kb on + strandat 3059.036 kb on - strandat 3059.040 kb on + strandat 3059.096 kb on - strandat 3059.151 kb on + strandat 3059.151 kb on + strandat 3059.151 kb on + strandat 3059.156 kb on + strandat 3059.157 kb on - strandat 3059.157 kb on - strandat 3059.180 kb on + strandat 3059.380 kb on + strand, within IAI46_14425at 3059.495 kb on + strand, within IAI46_14425at 3059.496 kb on - strand, within IAI46_14425at 3059.744 kb on - strand, within IAI46_14425at 3059.888 kb on + strand, within IAI46_14425at 3059.888 kb on + strand, within IAI46_14425at 3059.888 kb on + strand, within IAI46_14425at 3060.006 kb on + strandat 3060.079 kb on - strandat 3060.171 kb on - strand, within IAI46_14430at 3060.177 kb on + strand, within IAI46_14430at 3060.194 kb on - strand, within IAI46_14430at 3060.253 kb on - strand, within IAI46_14430at 3060.291 kb on + strand, within IAI46_14430at 3060.292 kb on - strand, within IAI46_14430at 3060.292 kb on - strand, within IAI46_14430at 3060.333 kb on + strand, within IAI46_14430at 3060.346 kb on + strand, within IAI46_14430at 3060.364 kb on + strand, within IAI46_14430at 3060.364 kb on + strand, within IAI46_14430at 3060.365 kb on - strand, within IAI46_14430at 3060.368 kb on + strand, within IAI46_14430at 3060.368 kb on + strand, within IAI46_14430at 3060.369 kb on - strand, within IAI46_14430at 3060.419 kb on + strand, within IAI46_14430at 3060.517 kb on + strand, within IAI46_14430at 3060.517 kb on + strand, within IAI46_14430at 3060.560 kb on + strand, within IAI46_14430at 3060.715 kb on - strand, within IAI46_14430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
3,058,533 + IAI46_14420 0.13 +0.4
3,058,534 - IAI46_14420 0.13 +1.2
3,058,534 - IAI46_14420 0.13 +0.5
3,058,536 - IAI46_14420 0.14 +0.5
3,058,537 + IAI46_14420 0.14 +0.9
3,058,537 + IAI46_14420 0.14 -0.3
3,058,537 + IAI46_14420 0.14 +0.3
3,058,537 + IAI46_14420 0.14 +0.2
3,058,537 + IAI46_14420 0.14 -1.1
3,058,537 + IAI46_14420 0.14 -0.4
3,058,537 + IAI46_14420 0.14 -0.2
3,058,538 - IAI46_14420 0.14 +0.6
3,058,538 - IAI46_14420 0.14 +0.8
3,058,539 + IAI46_14420 0.14 -1.2
3,058,539 + IAI46_14420 0.14 +0.9
3,058,540 - IAI46_14420 0.14 +0.7
3,058,540 - IAI46_14420 0.14 -1.1
3,058,582 + IAI46_14420 0.23 -0.4
3,058,583 - IAI46_14420 0.23 -0.1
3,058,584 + IAI46_14420 0.24 +0.3
3,058,655 + IAI46_14420 0.38 +0.4
3,058,655 + IAI46_14420 0.38 +0.3
3,058,656 - IAI46_14420 0.39 -0.9
3,058,686 + IAI46_14420 0.45 +0.4
3,058,710 + IAI46_14420 0.50 +1.0
3,058,710 + IAI46_14420 0.50 +0.3
3,058,713 + IAI46_14420 0.50 +0.7
3,058,713 + IAI46_14420 0.50 -0.2
3,058,713 + IAI46_14420 0.50 +0.3
3,058,713 + IAI46_14420 0.50 +1.1
3,058,713 + IAI46_14420 0.50 +0.9
3,058,713 + IAI46_14420 0.50 -0.4
3,058,714 - IAI46_14420 0.51 -0.2
3,058,714 - IAI46_14420 0.51 +0.1
3,058,927 + +0.7
3,058,941 + +0.8
3,058,964 + +0.5
3,058,964 + +0.1
3,059,015 + -0.4
3,059,015 + -0.4
3,059,035 + +0.6
3,059,036 - +0.2
3,059,040 + -0.1
3,059,096 - -0.7
3,059,151 + +1.0
3,059,151 + -1.3
3,059,151 + +1.0
3,059,156 + +0.3
3,059,157 - -0.2
3,059,157 - -1.0
3,059,180 + +0.4
3,059,380 + IAI46_14425 0.13 -0.0
3,059,495 + IAI46_14425 0.28 +1.6
3,059,496 - IAI46_14425 0.28 +0.2
3,059,744 - IAI46_14425 0.58 -0.4
3,059,888 + IAI46_14425 0.76 +0.6
3,059,888 + IAI46_14425 0.76 +0.1
3,059,888 + IAI46_14425 0.76 +0.5
3,060,006 + +1.3
3,060,079 - -0.7
3,060,171 - IAI46_14430 0.11 +0.3
3,060,177 + IAI46_14430 0.12 +0.2
3,060,194 - IAI46_14430 0.14 +0.8
3,060,253 - IAI46_14430 0.21 +0.4
3,060,291 + IAI46_14430 0.26 -0.9
3,060,292 - IAI46_14430 0.26 -0.5
3,060,292 - IAI46_14430 0.26 -0.9
3,060,333 + IAI46_14430 0.31 +0.5
3,060,346 + IAI46_14430 0.33 +0.7
3,060,364 + IAI46_14430 0.35 -0.6
3,060,364 + IAI46_14430 0.35 +0.2
3,060,365 - IAI46_14430 0.35 +0.6
3,060,368 + IAI46_14430 0.36 +0.1
3,060,368 + IAI46_14430 0.36 +1.6
3,060,369 - IAI46_14430 0.36 -0.0
3,060,419 + IAI46_14430 0.42 -0.2
3,060,517 + IAI46_14430 0.55 -0.5
3,060,517 + IAI46_14430 0.55 +0.3
3,060,560 + IAI46_14430 0.60 +0.2
3,060,715 - IAI46_14430 0.80 -0.4

Or see this region's nucleotide sequence