Strain Fitness in Serratia liquefaciens MT49 around IAI46_12670

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12660 and IAI46_12665 are separated by 5 nucleotidesIAI46_12665 and IAI46_12670 overlap by 29 nucleotidesIAI46_12670 and IAI46_12675 are separated by 112 nucleotidesIAI46_12675 and IAI46_12680 are separated by 132 nucleotides IAI46_12660: IAI46_12660 - NAD(P)H-dependent oxidoreductase, at 2,691,623 to 2,692,396 _12660 IAI46_12665: IAI46_12665 - aldehyde dehydrogenase family protein, at 2,692,402 to 2,692,770 _12665 IAI46_12670: IAI46_12670 - MarR family transcriptional regulator, at 2,692,742 to 2,693,707 _12670 IAI46_12675: IAI46_12675 - PAS domain-containing protein, at 2,693,820 to 2,694,449 _12675 IAI46_12680: IAI46_12680 - amino acid permease, at 2,694,582 to 2,696,039 _12680 Position (kb) 2692 2693 2694Strain fitness (log2 ratio) -1 0 1 2at 2691.859 kb on + strand, within IAI46_12660at 2692.145 kb on - strand, within IAI46_12660at 2692.323 kb on - strandat 2692.388 kb on - strandat 2692.564 kb on + strand, within IAI46_12665at 2692.724 kb on - strand, within IAI46_12665at 2692.739 kb on - strandat 2692.846 kb on - strand, within IAI46_12670at 2693.132 kb on - strand, within IAI46_12670at 2693.169 kb on + strand, within IAI46_12670at 2693.172 kb on + strand, within IAI46_12670at 2693.172 kb on + strand, within IAI46_12670at 2693.293 kb on - strand, within IAI46_12670at 2693.429 kb on - strand, within IAI46_12670at 2693.526 kb on - strand, within IAI46_12670at 2693.722 kb on + strandat 2693.731 kb on - strandat 2693.752 kb on + strandat 2693.898 kb on - strand, within IAI46_12675at 2693.900 kb on - strand, within IAI46_12675at 2693.937 kb on - strand, within IAI46_12675at 2694.101 kb on + strand, within IAI46_12675at 2694.101 kb on + strand, within IAI46_12675at 2694.332 kb on - strand, within IAI46_12675at 2694.342 kb on - strand, within IAI46_12675at 2694.342 kb on - strand, within IAI46_12675at 2694.459 kb on - strandat 2694.518 kb on - strandat 2694.584 kb on - strandat 2694.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,691,859 + IAI46_12660 0.30 +1.1
2,692,145 - IAI46_12660 0.67 -0.3
2,692,323 - -0.7
2,692,388 - -1.4
2,692,564 + IAI46_12665 0.44 +0.9
2,692,724 - IAI46_12665 0.87 +1.0
2,692,739 - -0.3
2,692,846 - IAI46_12670 0.11 -1.1
2,693,132 - IAI46_12670 0.40 +1.1
2,693,169 + IAI46_12670 0.44 +0.2
2,693,172 + IAI46_12670 0.45 -0.2
2,693,172 + IAI46_12670 0.45 +0.3
2,693,293 - IAI46_12670 0.57 -0.3
2,693,429 - IAI46_12670 0.71 -0.1
2,693,526 - IAI46_12670 0.81 +0.4
2,693,722 + -0.5
2,693,731 - +1.9
2,693,752 + -0.6
2,693,898 - IAI46_12675 0.12 -0.3
2,693,900 - IAI46_12675 0.13 -0.3
2,693,937 - IAI46_12675 0.19 +0.9
2,694,101 + IAI46_12675 0.45 +0.1
2,694,101 + IAI46_12675 0.45 +0.4
2,694,332 - IAI46_12675 0.81 +0.0
2,694,342 - IAI46_12675 0.83 -0.8
2,694,342 - IAI46_12675 0.83 -1.0
2,694,459 - +0.7
2,694,518 - +1.9
2,694,584 - +0.3
2,694,617 - -0.1

Or see this region's nucleotide sequence