Strain Fitness in Serratia liquefaciens MT49 around IAI46_12425

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12420 and IAI46_12425 are separated by 174 nucleotidesIAI46_12425 and IAI46_12430 are separated by 8 nucleotidesIAI46_12430 and IAI46_12435 overlap by 11 nucleotides IAI46_12420: IAI46_12420 - aldehyde dehydrogenase family protein, at 2,638,989 to 2,640,506 _12420 IAI46_12425: IAI46_12425 - LysR family transcriptional regulator, at 2,640,681 to 2,641,607 _12425 IAI46_12430: IAI46_12430 - hypothetical protein, at 2,641,616 to 2,641,813 _12430 IAI46_12435: IAI46_12435 - FAD-dependent monooxygenase, at 2,641,803 to 2,643,515 _12435 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -2 -1 0 1 2at 2639.946 kb on - strand, within IAI46_12420at 2640.110 kb on - strand, within IAI46_12420at 2640.258 kb on + strand, within IAI46_12420at 2640.434 kb on - strandat 2640.434 kb on - strandat 2640.501 kb on - strandat 2640.507 kb on - strandat 2640.507 kb on - strandat 2640.556 kb on + strandat 2640.561 kb on + strandat 2640.561 kb on + strandat 2640.561 kb on + strandat 2640.635 kb on + strandat 2640.635 kb on + strandat 2640.635 kb on + strandat 2640.636 kb on - strandat 2640.636 kb on - strandat 2640.636 kb on - strandat 2640.638 kb on - strandat 2640.695 kb on - strandat 2640.782 kb on + strand, within IAI46_12425at 2640.918 kb on + strand, within IAI46_12425at 2640.918 kb on + strand, within IAI46_12425at 2640.919 kb on - strand, within IAI46_12425at 2641.154 kb on - strand, within IAI46_12425at 2641.163 kb on - strand, within IAI46_12425at 2641.163 kb on - strand, within IAI46_12425at 2641.477 kb on - strand, within IAI46_12425at 2641.500 kb on + strand, within IAI46_12425at 2641.617 kb on + strandat 2641.618 kb on - strandat 2641.652 kb on + strand, within IAI46_12430at 2641.761 kb on + strand, within IAI46_12430at 2641.773 kb on + strand, within IAI46_12430at 2641.774 kb on - strand, within IAI46_12430at 2641.804 kb on + strandat 2641.940 kb on - strandat 2642.211 kb on + strand, within IAI46_12435at 2642.212 kb on - strand, within IAI46_12435at 2642.340 kb on - strand, within IAI46_12435at 2642.452 kb on - strand, within IAI46_12435at 2642.505 kb on - strand, within IAI46_12435at 2642.506 kb on + strand, within IAI46_12435at 2642.507 kb on - strand, within IAI46_12435at 2642.507 kb on - strand, within IAI46_12435at 2642.600 kb on - strand, within IAI46_12435

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,639,946 - IAI46_12420 0.63 +0.0
2,640,110 - IAI46_12420 0.74 -1.2
2,640,258 + IAI46_12420 0.84 +0.2
2,640,434 - +0.4
2,640,434 - +0.2
2,640,501 - +0.4
2,640,507 - -0.4
2,640,507 - +0.8
2,640,556 + +0.2
2,640,561 + +1.0
2,640,561 + +0.2
2,640,561 + +0.1
2,640,635 + -1.0
2,640,635 + -0.4
2,640,635 + -0.5
2,640,636 - -0.2
2,640,636 - +0.1
2,640,636 - +1.4
2,640,638 - -0.4
2,640,695 - -0.2
2,640,782 + IAI46_12425 0.11 -1.6
2,640,918 + IAI46_12425 0.26 -0.8
2,640,918 + IAI46_12425 0.26 +0.7
2,640,919 - IAI46_12425 0.26 +1.0
2,641,154 - IAI46_12425 0.51 -0.2
2,641,163 - IAI46_12425 0.52 +0.1
2,641,163 - IAI46_12425 0.52 -0.8
2,641,477 - IAI46_12425 0.86 +0.8
2,641,500 + IAI46_12425 0.88 +1.6
2,641,617 + +1.7
2,641,618 - +2.4
2,641,652 + IAI46_12430 0.18 +2.3
2,641,761 + IAI46_12430 0.73 -0.6
2,641,773 + IAI46_12430 0.79 -0.6
2,641,774 - IAI46_12430 0.80 -1.9
2,641,804 + -0.8
2,641,940 - +1.0
2,642,211 + IAI46_12435 0.24 +1.4
2,642,212 - IAI46_12435 0.24 +0.2
2,642,340 - IAI46_12435 0.31 +0.0
2,642,452 - IAI46_12435 0.38 +0.9
2,642,505 - IAI46_12435 0.41 +0.4
2,642,506 + IAI46_12435 0.41 +1.1
2,642,507 - IAI46_12435 0.41 +0.4
2,642,507 - IAI46_12435 0.41 +0.6
2,642,600 - IAI46_12435 0.47 +0.9

Or see this region's nucleotide sequence