Strain Fitness in Serratia liquefaciens MT49 around IAI46_12240

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12235 and IAI46_12240 are separated by 196 nucleotidesIAI46_12240 and IAI46_12245 overlap by 1 nucleotidesIAI46_12245 and IAI46_12250 are separated by 91 nucleotides IAI46_12235: IAI46_12235 - sigma 54-interacting transcriptional regulator, at 2,594,641 to 2,596,599 _12235 IAI46_12240: IAI46_12240 - Gfo/Idh/MocA family oxidoreductase, at 2,596,796 to 2,597,812 _12240 IAI46_12245: IAI46_12245 - TIM barrel protein, at 2,597,812 to 2,598,591 _12245 IAI46_12250: IAI46_12250 - substrate-binding domain-containing protein, at 2,598,683 to 2,599,606 _12250 Position (kb) 2596 2597 2598Strain fitness (log2 ratio) -2 -1 0 1at 2596.136 kb on + strand, within IAI46_12235at 2596.136 kb on + strand, within IAI46_12235at 2596.137 kb on - strand, within IAI46_12235at 2596.236 kb on - strand, within IAI46_12235at 2596.289 kb on + strand, within IAI46_12235at 2596.454 kb on - strandat 2596.479 kb on + strandat 2596.480 kb on - strandat 2596.775 kb on + strandat 2596.784 kb on + strandat 2596.784 kb on + strandat 2596.795 kb on + strandat 2597.020 kb on - strand, within IAI46_12240at 2597.387 kb on + strand, within IAI46_12240at 2597.388 kb on - strand, within IAI46_12240at 2597.513 kb on + strand, within IAI46_12240at 2597.514 kb on - strand, within IAI46_12240at 2597.835 kb on - strandat 2597.849 kb on + strandat 2597.971 kb on - strand, within IAI46_12245at 2597.971 kb on - strand, within IAI46_12245at 2598.182 kb on + strand, within IAI46_12245at 2598.408 kb on - strand, within IAI46_12245at 2598.491 kb on + strand, within IAI46_12245at 2598.563 kb on + strandat 2598.653 kb on + strandat 2598.788 kb on - strand, within IAI46_12250

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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2,596,136 + IAI46_12235 0.76 +0.7
2,596,136 + IAI46_12235 0.76 +0.4
2,596,137 - IAI46_12235 0.76 -0.3
2,596,236 - IAI46_12235 0.81 +1.1
2,596,289 + IAI46_12235 0.84 -0.1
2,596,454 - +0.7
2,596,479 + -0.5
2,596,480 - +0.5
2,596,775 + -1.6
2,596,784 + -0.7
2,596,784 + +0.1
2,596,795 + +1.2
2,597,020 - IAI46_12240 0.22 +0.7
2,597,387 + IAI46_12240 0.58 -1.0
2,597,388 - IAI46_12240 0.58 -0.6
2,597,513 + IAI46_12240 0.71 -0.2
2,597,514 - IAI46_12240 0.71 +0.3
2,597,835 - +0.3
2,597,849 + -1.0
2,597,971 - IAI46_12245 0.20 +0.3
2,597,971 - IAI46_12245 0.20 -0.0
2,598,182 + IAI46_12245 0.47 +0.3
2,598,408 - IAI46_12245 0.76 +0.3
2,598,491 + IAI46_12245 0.87 -0.6
2,598,563 + +1.2
2,598,653 + +0.8
2,598,788 - IAI46_12250 0.11 -2.1

Or see this region's nucleotide sequence